SRR27205855 · Gut microbiome

SRR27205855

complete

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Species	Genus	Abundance (%)
Blautia glucerasea	Blautia	16.3119
Phocaeicola dorei	Phocaeicola	13.1671
Blautia producta	Blautia	12.0790
Collinsella aerofaciens	Collinsella	10.0789
Bacteroides ovatus	Bacteroides	7.6640
Bacteroides uniformis	Bacteroides	6.5329
Dorea formicigenerans	Dorea	4.4927
Anaerobutyricum hallii	Anaerobutyricum	3.4245
Agathobacter ruminis	Agathobacter	3.2174
Anaerostipes hadrus	Anaerostipes	3.1860
Blautia hansenii	Blautia	2.6990
Faecalibacterium prausnitzii	Faecalibacterium	2.5589
Streptococcus parasanguinis	Streptococcus	1.2853
Streptococcus salivarius	Streptococcus	1.2233
Bacteroides fragilis	Bacteroides	0.9957
Bacteroides xylanisolvens	Bacteroides	0.9697
Bacteroides cellulosilyticus	Bacteroides	0.8354
Bacteroides zoogleoformans	Bacteroides	0.8026
Agathobaculum desmolans	Agathobaculum	0.6605
Fusicatenibacter saccharivorans	Fusicatenibacter	0.6604
Alistipes putredinis	Alistipes	0.6212
Bacteroides intestinalis	Bacteroides	0.6012
Dialister invisus	Dialister	0.5951
Phocaeicola vulgatus	Phocaeicola	0.5917
Blautia luti	Blautia	0.5473
Bacteroides thetaiotaomicron	Bacteroides	0.4580
Streptococcus equinus	Streptococcus	0.4546
Anaerotignum lactatifermentans	Anaerotignum	0.3961
Streptococcus sanguinis	Streptococcus	0.3954
Anaerotignum faecicola	Anaerotignum	0.3038
Lactiplantibacillus plantarum	Lactiplantibacillus	0.2812
Bacteroides coprosuis	Bacteroides	0.2698
Bacteroides rodentium	Bacteroides	0.2600
Limosilactobacillus mucosae	Limosilactobacillus	0.2158
Blautia marasmi	Blautia	0.2076
Collinsella intestinalis	Collinsella	0.1717
Collinsella stercoris	Collinsella	0.1601
Streptococcus vestibularis	Streptococcus	0.1597
Blautia faecis	Blautia	0.1572
Blautia wexlerae	Blautia	0.1569
Eshraghiella crossota	Eshraghiella	0.1504

Saved public metadata

{
  "run_accession": "SRR27205855",
  "study_accession": "PRJNA1052613",
  "sample_accession": "SAMN38838667",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "GridION",
  "library_strategy": "AMPLICON",
  "library_source": "METAGENOMIC",
  "library_selection": "RT-PCR",
  "read_count": "68490",
  "base_count": "101807914",
  "fastq_bytes": "80152596",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/055/SRR27205855/SRR27205855_1.fastq.gz",
  "sample_title": "",
  "scientific_name": ""
}

Public files

SRR27205855_1.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "complete",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "ae0351a746479f31b9fa01b6b3249b7ff10ae785eb7bfc3b4dcc0df211f1d647",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 1492.0,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {
    "marker": "16s",
    "pipeline": "v18.8",
    "gpu": "RTX-PRO-6000",
    "input_path": "volume-fastq-gz",
    "reads_in": 20000,
    "reads_skipped": 4580,
    "elapsed_seconds": 1.6979498770001555,
    "reads_submitted": 20000,
    "reads_after_filter": 20000,
    "adapter_scan": {
      "sampled": 200,
      "matched": 109,
      "fraction": 0.545,
      "adapters_found": {
        "27F": 103,
        "1492R_rc": 5,
        "BC_FLANK": 1
      },
      "should_trim": true
    },
    "porechop_ran": false,
    "porechop_reason": "fast-path: no adapter trimming required"
  },
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}