SRR27205854 · Gut microbiome
Pre-Sham HY14
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia producta | Blautia | 20.1766 |
| Blautia glucerasea | Blautia | 18.6202 |
| Faecalibacterium prausnitzii | Faecalibacterium | 8.6842 |
| Anaerostipes hadrus | Anaerostipes | 8.1109 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 6.5396 |
| Roseburia hominis | Roseburia | 6.1209 |
| Streptococcus thermophilus | Streptococcus | 5.3906 |
| Roseburia intestinalis | Roseburia | 3.9210 |
| Blautia hansenii | Blautia | 3.1284 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.4351 |
| Akkermansia muciniphila | Akkermansia | 1.5939 |
| Dorea formicigenerans | Dorea | 1.3167 |
| Bacteroides uniformis | Bacteroides | 1.2874 |
| Phocaeicola vulgatus | Phocaeicola | 1.2491 |
| Eubacterium oxidoreducens | Eubacterium | 1.0593 |
| Collinsella aerofaciens | Collinsella | 1.0255 |
| Corynebacterium resistens | Corynebacterium | 0.9463 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.8631 |
| Streptococcus salivarius | Streptococcus | 0.8317 |
| Blautia luti | Blautia | 0.7808 |
| Phocaeicola dorei | Phocaeicola | 0.7118 |
| Roseburia inulinivorans | Roseburia | 0.6641 |
| Ruminococcus champanellensis | Ruminococcus | 0.5709 |
| Parabacteroides distasonis | Parabacteroides | 0.5266 |
| Blautia marasmi | Blautia | 0.4238 |
| Eubacterium ventriosum | Eubacterium | 0.4146 |
| Phocaeicola coprophilus | Phocaeicola | 0.4088 |
| Bacteroides intestinalis | Bacteroides | 0.3478 |
| Phocaeicola coprocola | Phocaeicola | 0.3464 |
| Ruminococcus callidus | Ruminococcus | 0.2531 |
| Corynebacterium terpenotabidum | Corynebacterium | 0.2386 |
| Bacteroides caccae | Bacteroides | 0.2356 |
| Eubacterium ruminantium | Eubacterium | 0.2160 |
| Floricoccus tropicus | Floricoccus | 0.2082 |
| Blautia faecis | Blautia | 0.1804 |
| Blautia wexlerae | Blautia | 0.1718 |
Saved public metadata
{
"run_accession": "SRR27205854",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838665",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "101801",
"base_count": "151207427",
"fastq_bytes": "118818860",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/054/SRR27205854/SRR27205854_1.fastq.gz",
"sample_title": "Pre-Sham HY14",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "0ec3d10eee18d77dbf8eadb3ed8871465d333dd5bdf5c588a1f8e7c2061c384a",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1491.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5370,
"elapsed_seconds": 1.9190204790002099,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 80,
"fraction": 0.4,
"adapters_found": {
"27F": 76,
"1492R_rc": 4
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}