SRR27205853 · Gut microbiome
SRR27205853
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia producta | Blautia | 22.7724 |
| Blautia glucerasea | Blautia | 16.2462 |
| Anaerostipes hadrus | Anaerostipes | 15.7453 |
| Roseburia hominis | Roseburia | 7.3619 |
| Faecalibacterium prausnitzii | Faecalibacterium | 6.0917 |
| Dorea formicigenerans | Dorea | 5.7568 |
| Blautia hansenii | Blautia | 3.0616 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.8382 |
| Collinsella aerofaciens | Collinsella | 2.3043 |
| Eubacterium oxidoreducens | Eubacterium | 2.0290 |
| Akkermansia muciniphila | Akkermansia | 1.7186 |
| Blautia luti | Blautia | 1.6396 |
| Ruminococcus champanellensis | Ruminococcus | 1.5982 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 1.5411 |
| Roseburia intestinalis | Roseburia | 1.4713 |
| Bacteroides uniformis | Bacteroides | 1.2781 |
| Ruminococcus callidus | Ruminococcus | 1.1763 |
| Ruminococcus bromii | Ruminococcus | 0.5870 |
| Roseburia inulinivorans | Roseburia | 0.5557 |
| Phocaeicola vulgatus | Phocaeicola | 0.5064 |
| Eubacterium ventriosum | Eubacterium | 0.4432 |
| Allocoprococcus comes | Allocoprococcus | 0.4204 |
| Parabacteroides distasonis | Parabacteroides | 0.3930 |
| Pseudocoprococcus catus | Pseudocoprococcus | 0.3617 |
| Blautia marasmi | Blautia | 0.3498 |
| Eubacterium ruminantium | Eubacterium | 0.2774 |
| Bacteroides intestinalis | Bacteroides | 0.2479 |
| Anaerostipes rhamnosivorans | Anaerostipes | 0.2406 |
| Blautia wexlerae | Blautia | 0.2317 |
| Phocaeicola dorei | Phocaeicola | 0.2102 |
| Blautia faecis | Blautia | 0.1994 |
| Phocaeicola coprocola | Phocaeicola | 0.1773 |
| Anaerostipes butyraticus | Anaerostipes | 0.1682 |
Saved public metadata
{
"run_accession": "SRR27205853",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838664",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "89313",
"base_count": "132455422",
"fastq_bytes": "103092904",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/053/SRR27205853/SRR27205853_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "7e2cdac897497a14bc8baea1620375517f8e6b5fff6a7aaa42e397e69e033955",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1488.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6864,
"elapsed_seconds": 1.6143534740001542,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 36,
"fraction": 0.18,
"adapters_found": {
"27F": 31,
"1492R_rc": 5
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}