SRR27205851 · Gut microbiome
SRR27205851
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia producta | Blautia | 20.6426 |
| Blautia glucerasea | Blautia | 20.0128 |
| Anaerostipes hadrus | Anaerostipes | 10.2757 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 9.5445 |
| Faecalibacterium prausnitzii | Faecalibacterium | 7.8791 |
| Roseburia hominis | Roseburia | 4.4061 |
| Anaerobutyricum hallii | Anaerobutyricum | 3.9360 |
| Blautia hansenii | Blautia | 3.5895 |
| Dorea formicigenerans | Dorea | 3.5248 |
| Collinsella aerofaciens | Collinsella | 3.0373 |
| Akkermansia muciniphila | Akkermansia | 2.5427 |
| Blautia luti | Blautia | 1.2673 |
| Eubacterium oxidoreducens | Eubacterium | 1.2415 |
| Roseburia intestinalis | Roseburia | 1.1864 |
| Ruminococcus champanellensis | Ruminococcus | 1.1816 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.6884 |
| Ruminococcus callidus | Ruminococcus | 0.6226 |
| Bacteroides intestinalis | Bacteroides | 0.5922 |
| Blautia marasmi | Blautia | 0.4568 |
| Eubacterium ventriosum | Eubacterium | 0.4400 |
| Eubacterium ruminantium | Eubacterium | 0.3692 |
| Bacteroides uniformis | Bacteroides | 0.3274 |
| Roseburia inulinivorans | Roseburia | 0.3210 |
| Phocaeicola dorei | Phocaeicola | 0.3033 |
| Floricoccus penangensis | Floricoccus | 0.2647 |
| Phocaeicola vulgatus | Phocaeicola | 0.2539 |
| Blautia faecis | Blautia | 0.2508 |
| Anaerostipes rhamnosivorans | Anaerostipes | 0.2391 |
| Eubacterium limosum | Eubacterium | 0.2098 |
| Allocoprococcus comes | Allocoprococcus | 0.1974 |
| Blautia wexlerae | Blautia | 0.1954 |
Saved public metadata
{
"run_accession": "SRR27205851",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838663",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "73163",
"base_count": "108551411",
"fastq_bytes": "83994348",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/051/SRR27205851/SRR27205851_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3b780951eae057a80b5ebde86319d13fe32c1f2016f6e850eb5e6df6da592fd6",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1491.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5502,
"elapsed_seconds": 1.7014992300000813,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 118,
"fraction": 0.59,
"adapters_found": {
"27F": 115,
"1492R_rc": 3
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}