SRR27205850 · Gut microbiome
SRR27205850
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 42.2565 |
| Faecalibacterium prausnitzii | Faecalibacterium | 15.4917 |
| Prevotella jejuni | Prevotella | 7.9642 |
| Dialister invisus | Dialister | 4.6052 |
| Blautia glucerasea | Blautia | 3.6762 |
| Blautia producta | Blautia | 3.0025 |
| Prevotella melaninogenica | Prevotella | 2.7090 |
| Agathobacter ruminis | Agathobacter | 2.6130 |
| Anaerostipes hadrus | Anaerostipes | 2.5918 |
| Phocaeicola vulgatus | Phocaeicola | 1.9966 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.8121 |
| Prevotella oulorum | Prevotella | 1.1292 |
| Prevotella veroralis | Prevotella | 1.1217 |
| Hominimerdicola aceti | Hominimerdicola | 0.9445 |
| Phocaeicola massiliensis | Phocaeicola | 0.9368 |
| Coprococcus eutactus | Coprococcus | 0.6427 |
| Dorea formicigenerans | Dorea | 0.6085 |
| Collinsella aerofaciens | Collinsella | 0.5607 |
| Prevotella nigrescens | Prevotella | 0.5197 |
| Dialister hominis | Dialister | 0.4957 |
| Blautia hansenii | Blautia | 0.4401 |
| Prevotella oris | Prevotella | 0.4170 |
| Terrisporobacter mayombei | Terrisporobacter | 0.3898 |
| Anaerostipes butyraticus | Anaerostipes | 0.3866 |
| Prevotella brevis | Prevotella | 0.3540 |
| Parabacteroides distasonis | Parabacteroides | 0.3152 |
| Blautia luti | Blautia | 0.2967 |
| Terrisporobacter petrolearius | Terrisporobacter | 0.2656 |
| Agathobaculum desmolans | Agathobaculum | 0.2598 |
| Prevotella ruminicola | Prevotella | 0.2393 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.2120 |
| Parabacteroides merdae | Parabacteroides | 0.2120 |
| Eshraghiella crossota | Eshraghiella | 0.2051 |
| Prevotella dentalis | Prevotella | 0.1914 |
| Subdoligranulum variabile | Subdoligranulum | 0.1372 |
Saved public metadata
{
"run_accession": "SRR27205850",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838638",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "83357",
"base_count": "123811857",
"fastq_bytes": "96112569",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/050/SRR27205850/SRR27205850_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "46457545319e4fb8783e04dc25205873ee1adc2b68fe3d08bf7f65c63919a761",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1491.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5224,
"elapsed_seconds": 1.6140935120001814,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 106,
"fraction": 0.53,
"adapters_found": {
"27F": 106
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}