SRR27205849 · Gut microbiome
SRR27205849
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia glucerasea | Blautia | 20.9734 |
| Blautia producta | Blautia | 19.4600 |
| Anaerostipes hadrus | Anaerostipes | 17.2496 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.5060 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 5.4918 |
| Roseburia hominis | Roseburia | 4.3392 |
| Anaerobutyricum hallii | Anaerobutyricum | 3.2390 |
| Blautia hansenii | Blautia | 2.9101 |
| Dorea formicigenerans | Dorea | 2.4976 |
| Akkermansia muciniphila | Akkermansia | 1.7491 |
| Collinsella aerofaciens | Collinsella | 1.1831 |
| Roseburia intestinalis | Roseburia | 0.9973 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.8932 |
| Eubacterium oxidoreducens | Eubacterium | 0.8551 |
| Blautia luti | Blautia | 0.8290 |
| Blautia marasmi | Blautia | 0.4987 |
| Dialister invisus | Dialister | 0.4309 |
| Phocaeicola coprophilus | Phocaeicola | 0.4308 |
| Parabacteroides distasonis | Parabacteroides | 0.3578 |
| Barnesiella viscericola | Barnesiella | 0.3286 |
| Phocaeicola dorei | Phocaeicola | 0.3141 |
| Phocaeicola coprocola | Phocaeicola | 0.3032 |
| Bacteroides uniformis | Bacteroides | 0.2855 |
| Eubacterium ventriosum | Eubacterium | 0.2848 |
| Phocaeicola vulgatus | Phocaeicola | 0.2483 |
| Blautia wexlerae | Blautia | 0.2323 |
| Bacteroides intestinalis | Bacteroides | 0.1928 |
| Blautia faecis | Blautia | 0.1878 |
| Roseburia inulinivorans | Roseburia | 0.1867 |
| Anaerostipes rhamnosivorans | Anaerostipes | 0.1863 |
| Paraprevotella xylaniphila | Paraprevotella | 0.1825 |
| Eubacterium ruminantium | Eubacterium | 0.1753 |
Saved public metadata
{
"run_accession": "SRR27205849",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838666",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "97515",
"base_count": "144852680",
"fastq_bytes": "112385835",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/049/SRR27205849/SRR27205849_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b5e8955b13061bda0eafa705665f56dce588a857bbd296c8bb0445f6d83afba6",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1491.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6164,
"elapsed_seconds": 1.5314559560001726,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 97,
"fraction": 0.485,
"adapters_found": {
"27F": 92,
"1492R_rc": 5
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}