SRR27205848 · Gut microbiome
SRR27205848
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia producta | Blautia | 12.3592 |
| Blautia glucerasea | Blautia | 12.0887 |
| Collinsella aerofaciens | Collinsella | 11.9051 |
| Bacteroides ovatus | Bacteroides | 11.8575 |
| Phocaeicola dorei | Phocaeicola | 7.7456 |
| Bacteroides uniformis | Bacteroides | 7.6018 |
| Dorea formicigenerans | Dorea | 4.9835 |
| Anaerostipes hadrus | Anaerostipes | 4.0597 |
| Anaerobutyricum hallii | Anaerobutyricum | 3.4028 |
| Blautia hansenii | Blautia | 2.7455 |
| Faecalibacterium prausnitzii | Faecalibacterium | 2.3950 |
| Ruminococcus bromii | Ruminococcus | 2.3769 |
| Bacteroides zoogleoformans | Bacteroides | 2.0964 |
| Bacteroides xylanisolvens | Bacteroides | 1.8041 |
| Ruminococcus callidus | Ruminococcus | 1.3817 |
| Ruminococcus champanellensis | Ruminococcus | 1.3622 |
| Bacteroides cellulosilyticus | Bacteroides | 1.0651 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 1.0305 |
| Bacteroides fragilis | Bacteroides | 0.9999 |
| Blautia luti | Blautia | 0.7190 |
| Streptococcus salivarius | Streptococcus | 0.7048 |
| Bacteroides intestinalis | Bacteroides | 0.6751 |
| Alistipes putredinis | Alistipes | 0.5177 |
| Agathobacter ruminis | Agathobacter | 0.4678 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.3741 |
| Phocaeicola vulgatus | Phocaeicola | 0.3675 |
| Streptococcus parasanguinis | Streptococcus | 0.3618 |
| Escherichia coli | Escherichia | 0.3404 |
| Dialister invisus | Dialister | 0.2682 |
| Eshraghiella crossota | Eshraghiella | 0.2584 |
| Bacteroides rodentium | Bacteroides | 0.2447 |
| Collinsella stercoris | Collinsella | 0.2352 |
| Collinsella intestinalis | Collinsella | 0.2342 |
| Blautia marasmi | Blautia | 0.2317 |
| Alistipes finegoldii | Alistipes | 0.2148 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.2058 |
| Bacteroides coprosuis | Bacteroides | 0.1809 |
| Blautia wexlerae | Blautia | 0.1371 |
Saved public metadata
{
"run_accession": "SRR27205848",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838668",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "63881",
"base_count": "94668140",
"fastq_bytes": "74327246",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/048/SRR27205848/SRR27205848_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "c579310aff255752f8fabccdd36d59ac33e042a21d2c9db4a702df424928e64f",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1488.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 3879,
"elapsed_seconds": 1.6988376070003142,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 56,
"fraction": 0.28,
"adapters_found": {
"27F": 48,
"1492R_rc": 5,
"BC_FLANK": 3
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}