SRR27205842 · Gut microbiome
SRR27205842
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Akkermansia muciniphila | Akkermansia | 23.3256 |
| Phocaeicola vulgatus | Phocaeicola | 20.5871 |
| Megamonas hypermegale | Megamonas | 7.2125 |
| Blautia glucerasea | Blautia | 5.6868 |
| Bacteroides eggerthii | Bacteroides | 4.5843 |
| Blautia producta | Blautia | 4.1328 |
| Enterococcus faecium | Enterococcus | 4.0856 |
| Bacteroides uniformis | Bacteroides | 3.4591 |
| Megasphaera massiliensis | Megasphaera | 3.1175 |
| Faecalimonas umbilicata | Faecalimonas | 2.8904 |
| Roseburia intestinalis | Roseburia | 2.1408 |
| Bacteroides clarus | Bacteroides | 1.6768 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.5827 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 1.5261 |
| Phocaeicola dorei | Phocaeicola | 1.4667 |
| Agathobaculum desmolans | Agathobaculum | 1.3699 |
| Collinsella aerofaciens | Collinsella | 1.3337 |
| Phocaeicola massiliensis | Phocaeicola | 1.2228 |
| Parabacteroides distasonis | Parabacteroides | 0.9679 |
| Collinsella intestinalis | Collinsella | 0.7511 |
| Megasphaera elsdenii | Megasphaera | 0.7371 |
| Bacteroides ovatus | Bacteroides | 0.6878 |
| Bacteroides zoogleoformans | Bacteroides | 0.5888 |
| Blautia hansenii | Blautia | 0.5472 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.5226 |
| Bacteroides cellulosilyticus | Bacteroides | 0.5012 |
| Roseburia hominis | Roseburia | 0.4408 |
| Akkermansia glycaniphila | Akkermansia | 0.4067 |
| Bacteroides rodentium | Bacteroides | 0.3515 |
| Bacteroides caccae | Bacteroides | 0.2966 |
| Bacteroides xylanisolvens | Bacteroides | 0.2948 |
| Bacteroides fragilis | Bacteroides | 0.2701 |
| Bacteroides stercoris | Bacteroides | 0.2619 |
| Faecalimonas nexilis | Faecalimonas | 0.2099 |
| Dorea formicigenerans | Dorea | 0.2043 |
| Parabacteroides merdae | Parabacteroides | 0.1981 |
| Blautia luti | Blautia | 0.1854 |
| Bacteroides intestinalis | Bacteroides | 0.1750 |
Saved public metadata
{
"run_accession": "SRR27205842",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838640",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "81418",
"base_count": "120593509",
"fastq_bytes": "97226529",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/042/SRR27205842/SRR27205842_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "c7d29aefef142964dc3d35818677b9fb86404fcedd0d9ad2b113fa0c98c9eb06",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1486.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 3258,
"elapsed_seconds": 1.8616196899997703,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 105,
"fraction": 0.525,
"adapters_found": {
"27F": 103,
"BC_FLANK": 1,
"1492R_rc": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}