SRR27205841 · Gut microbiome
SRR27205841
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Enterococcus faecium | Enterococcus | 21.7224 |
| Faecalimonas umbilicata | Faecalimonas | 18.2793 |
| Blautia glucerasea | Blautia | 14.6131 |
| Blautia producta | Blautia | 11.0669 |
| Collinsella intestinalis | Collinsella | 5.2016 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 4.4270 |
| Escherichia coli | Escherichia | 3.9826 |
| Megasphaera massiliensis | Megasphaera | 2.6164 |
| Megamonas hypermegale | Megamonas | 2.4967 |
| Clostridium phytofermentans | Clostridium | 2.0781 |
| Blautia hansenii | Blautia | 1.7177 |
| Collinsella aerofaciens | Collinsella | 1.6352 |
| Clostridium saudiense | Clostridium | 1.6263 |
| Clostridium isatidis | Clostridium | 1.1603 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.0581 |
| Enterococcus hirae | Enterococcus | 0.8822 |
| Faecalimonas nexilis | Faecalimonas | 0.8575 |
| Clostridium botulinum | Clostridium | 0.8269 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 0.7123 |
| Megasphaera elsdenii | Megasphaera | 0.4308 |
| Dorea formicigenerans | Dorea | 0.3926 |
| Collinsella stercoris | Collinsella | 0.3801 |
| Clostridium septicum | Clostridium | 0.3479 |
| Eshraghiella crossota | Eshraghiella | 0.3319 |
| Blautia luti | Blautia | 0.2591 |
| Clostridium ramosum | Clostridium | 0.2293 |
| Clostridium estertheticum | Clostridium | 0.2282 |
| Enterococcus avium | Enterococcus | 0.1525 |
| Enterococcus durans | Enterococcus | 0.1500 |
| Blautia marasmi | Blautia | 0.1371 |
Saved public metadata
{
"run_accession": "SRR27205841",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838642",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "61194",
"base_count": "91364394",
"fastq_bytes": "71288784",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/041/SRR27205841/SRR27205841_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "f2242652bf2bb4b434c325a1befa9a04ebc0b1bce7cbab1c559b86b054879474",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1495.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 3302,
"elapsed_seconds": 2.4553496349999477,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 106,
"fraction": 0.53,
"adapters_found": {
"27F": 91,
"BC_FLANK": 7,
"1492R_rc": 8
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}