SRR27205836 · Gut microbiome
SRR27205836
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Roseburia hominis | Roseburia | 15.0508 |
| Faecalimonas umbilicata | Faecalimonas | 12.4115 |
| Megamonas hypermegale | Megamonas | 11.9097 |
| Blautia producta | Blautia | 10.4838 |
| Blautia glucerasea | Blautia | 10.3889 |
| Anaerobutyricum hallii | Anaerobutyricum | 5.2108 |
| Akkermansia muciniphila | Akkermansia | 4.6560 |
| Collinsella aerofaciens | Collinsella | 4.6220 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 3.9327 |
| Roseburia intestinalis | Roseburia | 2.6718 |
| Faecalibacterium prausnitzii | Faecalibacterium | 2.2180 |
| Dorea formicigenerans | Dorea | 2.1444 |
| Blautia hansenii | Blautia | 1.8030 |
| Dialister invisus | Dialister | 1.2123 |
| Bacteroides uniformis | Bacteroides | 0.9570 |
| Bacteroides clarus | Bacteroides | 0.8522 |
| Phocaeicola vulgatus | Phocaeicola | 0.8293 |
| Agathobaculum desmolans | Agathobaculum | 0.7661 |
| Bacteroides ovatus | Bacteroides | 0.6285 |
| Roseburia inulinivorans | Roseburia | 0.6204 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.5919 |
| Streptococcus salivarius | Streptococcus | 0.5759 |
| Faecalimonas nexilis | Faecalimonas | 0.5547 |
| Parabacteroides distasonis | Parabacteroides | 0.5005 |
| Blautia luti | Blautia | 0.3994 |
| Parabacteroides merdae | Parabacteroides | 0.3920 |
| Collinsella intestinalis | Collinsella | 0.3535 |
| Phocaeicola coprocola | Phocaeicola | 0.3530 |
| Bacteroides xylanisolvens | Bacteroides | 0.3303 |
| Ruminococcus champanellensis | Ruminococcus | 0.2625 |
| Bacteroides caccae | Bacteroides | 0.2494 |
| Phocaeicola dorei | Phocaeicola | 0.2429 |
| Floricoccus tropicus | Floricoccus | 0.2331 |
| Bacteroides intestinalis | Bacteroides | 0.2206 |
| Phocaeicola massiliensis | Phocaeicola | 0.2135 |
| Dorea longicatena | Dorea | 0.1863 |
| Streptococcus equinus | Streptococcus | 0.1834 |
| Eshraghiella crossota | Eshraghiella | 0.1804 |
| Dialister hominis | Dialister | 0.1798 |
| Blautia marasmi | Blautia | 0.1478 |
| Collinsella tanakaei | Collinsella | 0.1401 |
| Collinsella stercoris | Collinsella | 0.1399 |
Saved public metadata
{
"run_accession": "SRR27205836",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838687",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "47246",
"base_count": "70288718",
"fastq_bytes": "55314735",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/036/SRR27205836/SRR27205836_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "17245858919c0e8c23df7375cd654a3ab45229705b24e4e4a344f3468644e73a",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1493.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4840,
"elapsed_seconds": 1.7521781369998735,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 84,
"fraction": 0.42,
"adapters_found": {
"27F": 81,
"1492R_rc": 3
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}