SRR27205834 · Gut microbiome
Pre-Hypoxia HY04
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia glucerasea | Blautia | 20.4173 |
| Blautia producta | Blautia | 12.6187 |
| Megamonas hypermegale | Megamonas | 10.3472 |
| Faecalimonas umbilicata | Faecalimonas | 10.0324 |
| Enterococcus faecium | Enterococcus | 9.1876 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 4.3980 |
| Collinsella intestinalis | Collinsella | 3.9844 |
| Collinsella aerofaciens | Collinsella | 3.4017 |
| Escherichia coli | Escherichia | 3.1272 |
| Phocaeicola vulgatus | Phocaeicola | 2.9297 |
| Bacteroides caccae | Bacteroides | 2.4595 |
| Longicatena caecimuris | Longicatena | 2.4419 |
| Blautia hansenii | Blautia | 1.8575 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.1232 |
| Bacteroides eggerthii | Bacteroides | 1.0131 |
| Bacteroides uniformis | Bacteroides | 1.0074 |
| Megasphaera massiliensis | Megasphaera | 0.8288 |
| Phocaeicola massiliensis | Phocaeicola | 0.7139 |
| Faecalimonas nexilis | Faecalimonas | 0.6102 |
| Dorea formicigenerans | Dorea | 0.5847 |
| Parabacteroides distasonis | Parabacteroides | 0.5618 |
| Roseburia intestinalis | Roseburia | 0.5344 |
| Roseburia hominis | Roseburia | 0.5200 |
| Enterococcus hirae | Enterococcus | 0.5109 |
| Blautia luti | Blautia | 0.4957 |
| Agathobaculum desmolans | Agathobaculum | 0.4943 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.4757 |
| Collinsella stercoris | Collinsella | 0.4249 |
| Eshraghiella crossota | Eshraghiella | 0.3453 |
| Megasphaera elsdenii | Megasphaera | 0.3261 |
| Bacteroides ovatus | Bacteroides | 0.3103 |
| Ruminococcus champanellensis | Ruminococcus | 0.2829 |
| Phocaeicola dorei | Phocaeicola | 0.2675 |
| Bacteroides xylanisolvens | Bacteroides | 0.2076 |
| Roseburia inulinivorans | Roseburia | 0.2075 |
| Blautia wexlerae | Blautia | 0.1853 |
| Bacteroides zoogleoformans | Bacteroides | 0.1709 |
| Bacteroides fragilis | Bacteroides | 0.1646 |
| Bacteroides clarus | Bacteroides | 0.1526 |
| Blautia marasmi | Blautia | 0.1470 |
| Escherichia fergusonii | Escherichia | 0.1306 |
Saved public metadata
{
"run_accession": "SRR27205834",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838641",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "88732",
"base_count": "132158822",
"fastq_bytes": "105224036",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/034/SRR27205834/SRR27205834_1.fastq.gz",
"sample_title": "Pre-Hypoxia HY04",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "38caf83d5300dc1839cd88db6b4e09314895cb89b8b3b41af463c39ffb418dee",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1494.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 3532,
"elapsed_seconds": 2.058491068999956,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 112,
"fraction": 0.56,
"adapters_found": {
"27F": 102,
"BC_FLANK": 5,
"1492R_rc": 5
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}