SRR27205833 · Gut microbiome

SRR27205833

complete

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Species	Genus	Abundance (%)
Blautia glucerasea	Blautia	15.7272
Roseburia hominis	Roseburia	13.8103
Blautia producta	Blautia	12.6892
Faecalibacterium prausnitzii	Faecalibacterium	8.9770
Holdemanella biformis	Holdemanella	8.7246
Mediterraneibacter glycyrrhizinilyticus	Mediterraneibacter	6.4585
Clostridium phytofermentans	Clostridium	4.1886
Blautia hansenii	Blautia	3.1691
Anaerostipes hadrus	Anaerostipes	2.7960
Roseburia intestinalis	Roseburia	2.3801
Clostridium saudiense	Clostridium	2.2521
Anaerobutyricum hallii	Anaerobutyricum	2.1293
Megasphaera elsdenii	Megasphaera	1.4720
Hominimerdicola aceti	Hominimerdicola	1.3893
Clostridium isatidis	Clostridium	1.2936
Collinsella aerofaciens	Collinsella	1.2451
Clostridium botulinum	Clostridium	1.1400
Ligilactobacillus ruminis	Ligilactobacillus	0.9033
Dorea formicigenerans	Dorea	0.8834
Roseburia inulinivorans	Roseburia	0.6840
Prevotella copri	Prevotella	0.6760
Prevotella melaninogenica	Prevotella	0.6287
Ruminococcus champanellensis	Ruminococcus	0.5773
Blautia luti	Blautia	0.5731
Barnesiella viscericola	Barnesiella	0.5620
Catenibacterium mitsuokai	Catenibacterium	0.5286
Peptococcus niger	Peptococcus	0.5219
Alistipes onderdonkii	Alistipes	0.5120
Fusicatenibacter saccharivorans	Fusicatenibacter	0.4014
Parabacteroides distasonis	Parabacteroides	0.3747
Roseburia faecis	Roseburia	0.3107
Romboutsia timonensis	Romboutsia	0.2944
Clostridium beijerinckii	Clostridium	0.2922
Blautia marasmi	Blautia	0.2345
Alistipes dispar	Alistipes	0.2173
Parabacteroides merdae	Parabacteroides	0.2007
Clostridium estertheticum	Clostridium	0.1862
Allocoprococcus comes	Allocoprococcus	0.1606
Clostridium sporogenes	Clostridium	0.1473
Anaeromassilibacillus senegalensis	Anaeromassilibacillus	0.1472
Blautia faecis	Blautia	0.1407

Saved public metadata

{
  "run_accession": "SRR27205833",
  "study_accession": "PRJNA1052613",
  "sample_accession": "SAMN38838643",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "GridION",
  "library_strategy": "AMPLICON",
  "library_source": "METAGENOMIC",
  "library_selection": "RT-PCR",
  "read_count": "148318",
  "base_count": "220306425",
  "fastq_bytes": "175242974",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/033/SRR27205833/SRR27205833_1.fastq.gz",
  "sample_title": "",
  "scientific_name": ""
}

Public files

SRR27205833_1.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "complete",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "3ea8dfa6e10c542e721469ff7ca26740c4f82e3ad201d85cdeb423a64e9691cc",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 1491.0,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {
    "marker": "16s",
    "pipeline": "v18.8",
    "gpu": "RTX-PRO-6000",
    "input_path": "volume-fastq-gz",
    "reads_in": 20000,
    "reads_skipped": 4837,
    "elapsed_seconds": 2.308751992999987,
    "reads_submitted": 20000,
    "reads_after_filter": 20000,
    "adapter_scan": {
      "sampled": 200,
      "matched": 110,
      "fraction": 0.55,
      "adapters_found": {
        "27F": 108,
        "1492R_rc": 2
      },
      "should_trim": true
    },
    "porechop_ran": false,
    "porechop_reason": "fast-path: no adapter trimming required"
  },
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}