SRR27205832 · Gut microbiome
Post-Hypoxia HY05
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Holdemanella biformis | Holdemanella | 16.5652 |
| Blautia glucerasea | Blautia | 14.9641 |
| Blautia producta | Blautia | 12.0029 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 11.4378 |
| Faecalibacterium prausnitzii | Faecalibacterium | 10.7428 |
| Dorea formicigenerans | Dorea | 6.6078 |
| Roseburia hominis | Roseburia | 5.3890 |
| Collinsella aerofaciens | Collinsella | 3.7004 |
| Anaerobutyricum hallii | Anaerobutyricum | 3.1442 |
| Blautia hansenii | Blautia | 3.0765 |
| Hominimerdicola aceti | Hominimerdicola | 2.3933 |
| Anaerostipes hadrus | Anaerostipes | 1.7174 |
| Roseburia intestinalis | Roseburia | 1.5034 |
| Catenibacterium mitsuokai | Catenibacterium | 1.1807 |
| Ruminococcus champanellensis | Ruminococcus | 1.1312 |
| Roseburia inulinivorans | Roseburia | 0.6577 |
| Blautia luti | Blautia | 0.5464 |
| Peptococcus niger | Peptococcus | 0.4911 |
| Ihubacter massiliensis | Ihubacter | 0.3458 |
| Ruminococcus callidus | Ruminococcus | 0.3178 |
| Dorea longicatena | Dorea | 0.2560 |
| Anaerotignum faecicola | Anaerotignum | 0.2559 |
| Allocoprococcus comes | Allocoprococcus | 0.2350 |
| Catenisphaera adipataccumulans | Catenisphaera | 0.2164 |
| Agathobaculum desmolans | Agathobaculum | 0.2144 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.1945 |
| Blautia faecis | Blautia | 0.1935 |
| Hominimerdicola alba | Hominimerdicola | 0.1797 |
| Blautia marasmi | Blautia | 0.1766 |
| Ruminococcus bromii | Ruminococcus | 0.1625 |
Saved public metadata
{
"run_accession": "SRR27205832",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838644",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "70645",
"base_count": "104881484",
"fastq_bytes": "82400020",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/032/SRR27205832/SRR27205832_1.fastq.gz",
"sample_title": "Post-Hypoxia HY05",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3d330f3f3f392cebde06af8f4d95fa333f5f07a4f1a4bad48dd91cfc4e4ed375",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1491.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5500,
"elapsed_seconds": 1.6331874339998649,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 112,
"fraction": 0.56,
"adapters_found": {
"27F": 102,
"BC_FLANK": 1,
"1492R_rc": 9
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}