SRR26722959 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Enterobacter soli | Enterobacter | 9.0976 |
| Acinetobacter baumannii | Acinetobacter | 7.5919 |
| Morganella morganii | Morganella | 6.4924 |
| Acinetobacter johnsonii | Acinetobacter | 6.3805 |
| Clostridium sporogenes | Clostridium | 5.4945 |
| Enterobacter roggenkampii | Enterobacter | 5.4447 |
| Enterobacter cloacae | Enterobacter | 5.2955 |
| Flavobacterium psychrophilum | Flavobacterium | 5.1707 |
| Clostridium thermosuccinogenes | Clostridium | 5.0400 |
| Cedecea neteri | Cedecea | 4.4608 |
| Enterobacter hormaechei | Enterobacter | 4.3422 |
| Arcobacter trophiarum | Arcobacter | 3.7385 |
| Shewanella canadensis | Shewanella | 3.3159 |
| Enterobacter ludwigii | Enterobacter | 3.0543 |
| Flavobacterium columnare | Flavobacterium | 2.9987 |
| Shewanella algae | Shewanella | 2.9951 |
| Clostridium phytofermentans | Clostridium | 2.6421 |
| Arcobacter anaerophilus | Arcobacter | 1.9865 |
| Mycoplasma mycoides | Mycoplasma | 1.8725 |
| Acinetobacter radioresistens | Acinetobacter | 1.7855 |
| Mycoplasma iguanae | Mycoplasma | 1.7801 |
| Mycoplasma yeatsii | Mycoplasma | 1.5861 |
| Arcobacter halophilus | Arcobacter | 1.5189 |
| Shewanella hafniensis | Shewanella | 1.4685 |
| Shewanella hanedai | Shewanella | 1.2316 |
| Enterobacter asburiae | Enterobacter | 1.1712 |
| Arcobacter bivalviorum | Arcobacter | 1.0672 |
| Clostridium merdae | Clostridium | 0.9762 |
Saved public metadata
{
"run_accession": "SRR26722959",
"study_accession": "PRJNA1036276",
"sample_accession": "SAMN38122190",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "338418",
"base_count": "165981349",
"fastq_bytes": "149547631",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR267/059/SRR26722959/SRR26722959_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "9c2f9db6f8f09e2cd24a32e37ee20d3c7684efdb438ccd7ae3cdd48757f7ff65",
"length_window_bp": [
1200,
2000
],
"median_read_length": 549.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 17585,
"elapsed_seconds": 1.284470039000098,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 116,
"fraction": 0.58,
"adapters_found": {
"BC_FLANK": 115,
"NA_5p": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}