SRR26273133 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus helveticus | Lactobacillus | 17.5046 |
| Romboutsia sedimentorum | Romboutsia | 10.3993 |
| Lactobacillus psittaci | Lactobacillus | 8.6430 |
| Ruminococcus champanellensis | Ruminococcus | 7.3112 |
| Lactobacillus delbrueckii | Lactobacillus | 6.3075 |
| Clostridium phytofermentans | Clostridium | 4.3100 |
| Lactobacillus amylovorus | Lactobacillus | 3.8619 |
| Lactobacillus gasseri | Lactobacillus | 3.2386 |
| Romboutsia lituseburensis | Romboutsia | 3.1859 |
| Emergencia timonensis | Emergencia | 3.1809 |
| Clostridium botulinum | Clostridium | 2.9870 |
| Lactobacillus johnsonii | Lactobacillus | 2.5413 |
| Ruminococcus flavefaciens | Ruminococcus | 2.4840 |
| Clostridium estertheticum | Clostridium | 2.3701 |
| Ruminococcus callidus | Ruminococcus | 2.3407 |
| Limosilactobacillus frumenti | Limosilactobacillus | 2.0570 |
| Clostridium thermosuccinogenes | Clostridium | 2.0172 |
| Ruminococcus bromii | Ruminococcus | 1.8911 |
| Clostridium isatidis | Clostridium | 1.8883 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.7451 |
| Limosilactobacillus oris | Limosilactobacillus | 1.2160 |
| Limosilactobacillus vaginalis | Limosilactobacillus | 1.1904 |
| Parabacteroides distasonis | Parabacteroides | 1.0382 |
| Limosilactobacillus reuteri | Limosilactobacillus | 1.0264 |
| Clostridium beijerinckii | Clostridium | 0.9639 |
| Clostridium septicum | Clostridium | 0.9380 |
| Lactobacillus acetotolerans | Lactobacillus | 0.8674 |
| Clostridium sporogenes | Clostridium | 0.7801 |
| Clostridium butyricum | Clostridium | 0.7766 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.4806 |
| Limosilactobacillus fermentum | Limosilactobacillus | 0.4577 |
Saved public metadata
{
"run_accession": "SRR26273133",
"study_accession": "PRJNA1023681",
"sample_accession": "SAMN37668518",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "192074",
"base_count": "299134632",
"fastq_bytes": "292554280",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR262/033/SRR26273133/SRR26273133_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "dad876b2eec4d47349003e785eb98a9ffd6e0f7a850333e9b64862b7158fc630",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1583.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 15397,
"elapsed_seconds": 1.444165731000112,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 23,
"fraction": 0.115,
"adapters_found": {
"27F": 23
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}