SRR26273128 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 8.0687 |
| Ruminococcus champanellensis | Ruminococcus | 7.7527 |
| Intestinimonas butyriciproducens | Intestinimonas | 7.2498 |
| Blautia producta | Blautia | 6.6121 |
| Flintibacter butyricus | Flintibacter | 5.7520 |
| Limosilactobacillus reuteri | Limosilactobacillus | 5.6602 |
| Limosilactobacillus oris | Limosilactobacillus | 4.6291 |
| Blautia faecis | Blautia | 4.4686 |
| Lactobacillus helveticus | Lactobacillus | 3.6327 |
| Lactobacillus psittaci | Lactobacillus | 3.3540 |
| Weissella cibaria | Weissella | 3.2578 |
| Allobaculum stercoricanis | Allobaculum | 3.1955 |
| Staphylococcus aureus | Staphylococcus | 3.0117 |
| Limosilactobacillus vaginalis | Limosilactobacillus | 2.9885 |
| Lactobacillus amylovorus | Lactobacillus | 2.9818 |
| Limosilactobacillus frumenti | Limosilactobacillus | 2.4278 |
| Helicobacter apodemus | Helicobacter | 2.4165 |
| Ruminococcus callidus | Ruminococcus | 2.3550 |
| Lactobacillus delbrueckii | Lactobacillus | 2.0586 |
| Helicobacter bilis | Helicobacter | 1.7361 |
| Ruminococcus bromii | Ruminococcus | 1.6788 |
| Blautia hansenii | Blautia | 1.4769 |
| Lactobacillus gasseri | Lactobacillus | 1.3482 |
| Ruminococcus flavefaciens | Ruminococcus | 1.3352 |
| Weissella hellenica | Weissella | 1.2830 |
| Helicobacter canicola | Helicobacter | 1.1798 |
| Limosilactobacillus fermentum | Limosilactobacillus | 1.1684 |
| Streptococcus salivarius | Streptococcus | 0.9387 |
| Weissella thailandensis | Weissella | 0.8782 |
| Streptococcus anginosus | Streptococcus | 0.8189 |
| Blautia luti | Blautia | 0.7638 |
| Staphylococcus saprophyticus | Staphylococcus | 0.7630 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.6782 |
| Helicobacter hepaticus | Helicobacter | 0.5593 |
| Weissella ceti | Weissella | 0.5359 |
| Helicobacter pylori | Helicobacter | 0.5193 |
| Lactobacillus johnsonii | Lactobacillus | 0.4653 |
Saved public metadata
{
"run_accession": "SRR26273128",
"study_accession": "PRJNA1023681",
"sample_accession": "SAMN37668523",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "35927",
"base_count": "55828868",
"fastq_bytes": "54549062",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR262/028/SRR26273128/SRR26273128_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "458bac4e50194842732e1815fb840abeb39e6ed3e674cbe8a9e2b78022d4707a",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1589.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 14876,
"elapsed_seconds": 1.2766015059999063,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 17,
"fraction": 0.085,
"adapters_found": {
"27F": 17
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}