SRR26273126 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Hominimerdicola aceti | Hominimerdicola | 37.3363 |
| Intestinimonas butyriciproducens | Intestinimonas | 11.8550 |
| Ruminococcus champanellensis | Ruminococcus | 9.4956 |
| Lactobacillus johnsonii | Lactobacillus | 5.7359 |
| Lactobacillus psittaci | Lactobacillus | 4.8025 |
| Hominimerdicola alba | Hominimerdicola | 4.3604 |
| Limosilactobacillus reuteri | Limosilactobacillus | 4.1709 |
| Ruminococcus callidus | Ruminococcus | 3.4418 |
| Lactobacillus delbrueckii | Lactobacillus | 2.3894 |
| Ruminococcus flavefaciens | Ruminococcus | 2.2202 |
| Ruminococcus bromii | Ruminococcus | 2.0273 |
| Lactobacillus jensenii | Lactobacillus | 1.4803 |
| Lactobacillus gasseri | Lactobacillus | 1.2792 |
| Helicobacter hepaticus | Helicobacter | 1.2061 |
| Helicobacter typhlonius | Helicobacter | 1.1716 |
| Limosilactobacillus oris | Limosilactobacillus | 1.0822 |
| Prevotella denticola | Prevotella | 1.0530 |
| Lactobacillus helveticus | Lactobacillus | 0.9955 |
| Pseudoflavonifractor phocaeensis | Pseudoflavonifractor | 0.7756 |
| Prevotella intermedia | Prevotella | 0.6277 |
| Prevotella nigrescens | Prevotella | 0.5865 |
| Limosilactobacillus fermentum | Limosilactobacillus | 0.4398 |
| Helicobacter apodemus | Helicobacter | 0.3517 |
| Lactobacillus taiwanensis | Lactobacillus | 0.3020 |
| Prevotella heparinolytica | Prevotella | 0.2982 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.2694 |
| Intestinibacter bartlettii | Intestinibacter | 0.2460 |
Saved public metadata
{
"run_accession": "SRR26273126",
"study_accession": "PRJNA1023681",
"sample_accession": "SAMN37668511",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "127171",
"base_count": "195704296",
"fastq_bytes": "189002886",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR262/026/SRR26273126/SRR26273126_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "816b07baa1b1fdb6c7dc6767e8eb5be823988c36b22855aca184f6924b862d69",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1578.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 11378,
"elapsed_seconds": 1.3456862600000932,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 16,
"fraction": 0.08,
"adapters_found": {
"27F": 16
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}