SRR26273124 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Ruminococcus champanellensis | Ruminococcus | 23.9785 |
| Ruminococcus callidus | Ruminococcus | 8.5500 |
| Lactobacillus helveticus | Lactobacillus | 6.8273 |
| Ruminococcus bromii | Ruminococcus | 5.8966 |
| Lactobacillus psittaci | Lactobacillus | 4.6975 |
| Ruminococcus flavefaciens | Ruminococcus | 4.4918 |
| Klebsiella pneumoniae | Klebsiella | 4.4650 |
| Limosilactobacillus vaginalis | Limosilactobacillus | 4.1613 |
| Limosilactobacillus frumenti | Limosilactobacillus | 4.1580 |
| Lactobacillus delbrueckii | Lactobacillus | 3.9990 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 3.7768 |
| Limosilactobacillus oris | Limosilactobacillus | 3.3917 |
| Acidaminococcus intestini | Acidaminococcus | 3.1357 |
| Lactobacillus amylovorus | Lactobacillus | 2.2079 |
| Limosilactobacillus reuteri | Limosilactobacillus | 2.0526 |
| Lactobacillus gasseri | Lactobacillus | 1.9012 |
| Limosilactobacillus fermentum | Limosilactobacillus | 1.6581 |
| Muribaculum intestinale | Muribaculum | 1.5964 |
| Klebsiella michiganensis | Klebsiella | 1.3894 |
| Lactobacillus kefiranofaciens | Lactobacillus | 1.2706 |
| Limosilactobacillus mucosae | Limosilactobacillus | 1.1932 |
| Citrobacter freundii | Citrobacter | 1.0229 |
| Lactococcus lactis | Lactococcus | 1.0074 |
| Lactobacillus johnsonii | Lactobacillus | 0.8571 |
| Klebsiella variicola | Klebsiella | 0.7792 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 0.6976 |
| Flintibacter butyricus | Flintibacter | 0.5270 |
| Escherichia coli | Escherichia | 0.3100 |
Saved public metadata
{
"run_accession": "SRR26273124",
"study_accession": "PRJNA1023681",
"sample_accession": "SAMN37668513",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "86231",
"base_count": "134245125",
"fastq_bytes": "129618475",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR262/024/SRR26273124/SRR26273124_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3fdbb68465c50fa01b4c5617010f335fd1129b2a6cca9ca53593d4dbf0d13582",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1580.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 13449,
"elapsed_seconds": 1.392907335000018,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 25,
"fraction": 0.125,
"adapters_found": {
"27F": 25
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}