SRR26273122 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Clostridium phytofermentans | Clostridium | 14.3493 |
| Clostridium thermosuccinogenes | Clostridium | 12.4044 |
| Lactobacillus helveticus | Lactobacillus | 10.0036 |
| Ruminococcus champanellensis | Ruminococcus | 8.9433 |
| Lactobacillus psittaci | Lactobacillus | 7.6867 |
| Lactobacillus delbrueckii | Lactobacillus | 7.1880 |
| Romboutsia sedimentorum | Romboutsia | 6.8087 |
| Lactobacillus amylovorus | Lactobacillus | 3.6380 |
| Clostridium botulinum | Clostridium | 3.5851 |
| Ruminococcus callidus | Ruminococcus | 3.2622 |
| Clostridium sporogenes | Clostridium | 2.6300 |
| Lactobacillus gasseri | Lactobacillus | 2.5912 |
| Ruminococcus bromii | Ruminococcus | 2.3631 |
| Romboutsia lituseburensis | Romboutsia | 2.0307 |
| Ruminococcus flavefaciens | Ruminococcus | 1.8656 |
| Lactobacillus kefiranofaciens | Lactobacillus | 1.7045 |
| Clostridium estertheticum | Clostridium | 1.3665 |
| Pseudocoprococcus catus | Pseudocoprococcus | 1.2444 |
| Lactobacillus johnsonii | Lactobacillus | 1.1119 |
| Clostridium tetani | Clostridium | 0.9197 |
| Limosilactobacillus reuteri | Limosilactobacillus | 0.7401 |
| Limosilactobacillus oris | Limosilactobacillus | 0.6769 |
| Limosilactobacillus vaginalis | Limosilactobacillus | 0.5625 |
| Clostridium ramosum | Clostridium | 0.5405 |
| Limosilactobacillus frumenti | Limosilactobacillus | 0.4693 |
| Escherichia coli | Escherichia | 0.4579 |
| Neglectibacter timonensis | Neglectibacter | 0.4579 |
| Alistipes inops | Alistipes | 0.3982 |
Saved public metadata
{
"run_accession": "SRR26273122",
"study_accession": "PRJNA1023681",
"sample_accession": "SAMN37668515",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "58258",
"base_count": "90963783",
"fastq_bytes": "87355193",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR262/022/SRR26273122/SRR26273122_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "607de64e4275090e59a95107c5c1edbd319ef76f6c8789efe59e6aa642f9a3a1",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1594.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 14866,
"elapsed_seconds": 1.4092948750003416,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 23,
"fraction": 0.115,
"adapters_found": {
"27F": 23
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}