SRR26273121 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Ruminococcus champanellensis | Ruminococcus | 18.3417 |
| Intestinimonas butyriciproducens | Intestinimonas | 12.0969 |
| Ruminococcus callidus | Ruminococcus | 7.8101 |
| Blautia producta | Blautia | 5.7350 |
| Blautia faecis | Blautia | 5.1888 |
| Ruminococcus bromii | Ruminococcus | 4.8739 |
| Helicobacter apodemus | Helicobacter | 4.0355 |
| Ruminococcus flavefaciens | Ruminococcus | 3.7070 |
| Muribaculum intestinale | Muribaculum | 3.0218 |
| Prevotella nigrescens | Prevotella | 2.8898 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.6187 |
| Limosilactobacillus reuteri | Limosilactobacillus | 2.1208 |
| Prevotella denticola | Prevotella | 2.0296 |
| Helicobacter canicola | Helicobacter | 1.8014 |
| Prevotella heparinolytica | Prevotella | 1.6824 |
| Prevotella intermedia | Prevotella | 1.5763 |
| Helicobacter macacae | Helicobacter | 1.5124 |
| Helicobacter hepaticus | Helicobacter | 1.4798 |
| Helicobacter bilis | Helicobacter | 1.3573 |
| Helicobacter pylori | Helicobacter | 1.3212 |
| Helicobacter typhlonius | Helicobacter | 1.3129 |
| Streptococcus anginosus | Streptococcus | 1.2733 |
| Blautia hansenii | Blautia | 1.2482 |
| Streptococcus salivarius | Streptococcus | 1.2119 |
| Lactobacillus johnsonii | Lactobacillus | 1.1686 |
| Lactobacillus psittaci | Lactobacillus | 1.1275 |
| Prevotella oris | Prevotella | 1.0619 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.0386 |
| Helicobacter fennelliae | Helicobacter | 0.9663 |
| Prevotella enoeca | Prevotella | 0.9383 |
| Blautia luti | Blautia | 0.8535 |
| Limosilactobacillus oris | Limosilactobacillus | 0.7358 |
| Prevotella ruminicola | Prevotella | 0.6711 |
| Lactobacillus delbrueckii | Lactobacillus | 0.6288 |
| Prevotella bryantii | Prevotella | 0.5629 |
Saved public metadata
{
"run_accession": "SRR26273121",
"study_accession": "PRJNA1023681",
"sample_accession": "SAMN37668516",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "62565",
"base_count": "96818162",
"fastq_bytes": "94029953",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR262/021/SRR26273121/SRR26273121_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b4a8aac69b2ea8d5bd6af10f35cec70db695837d3a57a5dbdce0ddcce99867ea",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1584.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 15246,
"elapsed_seconds": 1.2355297629999313,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 10,
"fraction": 0.05,
"adapters_found": {
"27F": 10
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}