SRR26273120 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Ruminococcus champanellensis | Ruminococcus | 8.8951 |
| Lactobacillus psittaci | Lactobacillus | 8.8819 |
| Intestinimonas butyriciproducens | Intestinimonas | 8.1876 |
| Lactobacillus helveticus | Lactobacillus | 7.6985 |
| Blautia producta | Blautia | 7.4126 |
| Limosilactobacillus frumenti | Limosilactobacillus | 5.5256 |
| Lactobacillus delbrueckii | Lactobacillus | 5.4783 |
| Blautia faecis | Blautia | 4.0886 |
| Lactobacillus amylovorus | Lactobacillus | 3.6642 |
| Ruminococcus callidus | Ruminococcus | 3.1236 |
| Enterococcus faecium | Enterococcus | 3.0211 |
| Limosilactobacillus vaginalis | Limosilactobacillus | 2.6586 |
| Limosilactobacillus oris | Limosilactobacillus | 2.6151 |
| Limosilactobacillus reuteri | Limosilactobacillus | 2.3244 |
| Ruminococcus bromii | Ruminococcus | 2.2631 |
| Lactobacillus gasseri | Lactobacillus | 2.1640 |
| Enterococcus faecalis | Enterococcus | 2.1508 |
| Acidaminococcus intestini | Acidaminococcus | 1.9041 |
| Emergencia timonensis | Emergencia | 1.8522 |
| Muribaculum intestinale | Muribaculum | 1.7483 |
| Blautia hansenii | Blautia | 1.5170 |
| Ruminococcus flavefaciens | Ruminococcus | 1.5050 |
| Limosilactobacillus mucosae | Limosilactobacillus | 1.4512 |
| Limosilactobacillus fermentum | Limosilactobacillus | 1.4023 |
| Bacteroides fragilis | Bacteroides | 1.2982 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.1598 |
| Lactobacillus kefiranofaciens | Lactobacillus | 1.1369 |
| Citrobacter freundii | Citrobacter | 1.1252 |
| Enterococcus hirae | Enterococcus | 0.9558 |
| Oxalobacter formigenes | Oxalobacter | 0.8828 |
| Lactobacillus johnsonii | Lactobacillus | 0.6468 |
| Blautia luti | Blautia | 0.5874 |
| Lactobacillus acetotolerans | Lactobacillus | 0.4315 |
| Proteus vulgaris | Proteus | 0.2423 |
Saved public metadata
{
"run_accession": "SRR26273120",
"study_accession": "PRJNA1023681",
"sample_accession": "SAMN37668517",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "22675",
"base_count": "35083724",
"fastq_bytes": "34091863",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR262/020/SRR26273120/SRR26273120_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "2d92e49fcfa0e0aeb6e3a02775944e1070b7695d78294a75077da210cee3f32b",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1586.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 14093,
"elapsed_seconds": 1.427849407000167,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 16,
"fraction": 0.08,
"adapters_found": {
"27F": 16
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}