SRR26106570 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides timonensis | Bacteroides | 28.2597 |
| Spiroplasma eriocheiris | Spiroplasma | 18.4761 |
| Bacteroides stercoris | Bacteroides | 10.7847 |
| Clostridium thermosuccinogenes | Clostridium | 6.2958 |
| Bacteroides ovatus | Bacteroides | 5.3772 |
| Shewanella sediminis | Shewanella | 3.6926 |
| Chryseobacterium indologenes | Chryseobacterium | 3.4575 |
| Anaerorhabdus furcosa | Anaerorhabdus | 2.9601 |
| Shewanella canadensis | Shewanella | 2.3821 |
| Shewanella hanedai | Shewanella | 2.1428 |
| Dysgonomonas macrotermitis | Dysgonomonas | 1.8240 |
| Citrobacter freundii | Citrobacter | 1.6780 |
| Citrobacter europaeus | Citrobacter | 1.5797 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.4574 |
| Dysgonomonas oryzarvi | Dysgonomonas | 1.1985 |
| Shewanella halifaxensis | Shewanella | 1.1820 |
| Shewanella benthica | Shewanella | 0.9865 |
| Bacteroides xylanisolvens | Bacteroides | 0.7752 |
| Shewanella atlantica | Shewanella | 0.7425 |
| Dysgonomonas alginatilytica | Dysgonomonas | 0.7354 |
| Spiroplasma apis | Spiroplasma | 0.5633 |
| Bacteroides fragilis | Bacteroides | 0.5573 |
| Brachymonas denitrificans | Brachymonas | 0.4987 |
| Clostridium botulinum | Clostridium | 0.4691 |
| Shewanella putrefaciens | Shewanella | 0.3941 |
| Bacteroides graminisolvens | Bacteroides | 0.3315 |
| Bacteroides cellulosilyticus | Bacteroides | 0.3011 |
| Shewanella profunda | Shewanella | 0.2616 |
| Chryseobacterium balustinum | Chryseobacterium | 0.2266 |
| Dysgonomonas hofstadii | Dysgonomonas | 0.2078 |
| Clostridium sporogenes | Clostridium | 0.2011 |
Saved public metadata
{
"run_accession": "SRR26106570",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452511",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "60000",
"base_count": "98452638",
"fastq_bytes": "80223994",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/070/SRR26106570/SRR26106570_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b8c35e248a1da9bcd2f0ea1d7ed237c049926c0e247b2ca4d988b05d934d052d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1650.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 7463,
"elapsed_seconds": 1.6525702520002596,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 161,
"fraction": 0.805,
"adapters_found": {
"BC_FLANK": 159,
"27F": 2
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}