SRR26106569 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides timonensis | Bacteroides | 28.4528 |
| Spiroplasma eriocheiris | Spiroplasma | 14.2468 |
| Clostridium thermosuccinogenes | Clostridium | 9.6685 |
| Bacteroides stercoris | Bacteroides | 9.4912 |
| Bacteroides ovatus | Bacteroides | 6.1569 |
| Fusobacterium nucleatum | Fusobacterium | 4.8653 |
| Fusobacterium periodonticum | Fusobacterium | 4.3028 |
| Shewanella sediminis | Shewanella | 3.0903 |
| Anaerorhabdus furcosa | Anaerorhabdus | 2.3619 |
| Shewanella hanedai | Shewanella | 1.8882 |
| Dysgonomonas macrotermitis | Dysgonomonas | 1.6111 |
| Shewanella canadensis | Shewanella | 1.4950 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.4575 |
| Fusobacterium gonidiaformans | Fusobacterium | 1.0799 |
| Shewanella halifaxensis | Shewanella | 1.0601 |
| Fusobacterium ulcerans | Fusobacterium | 0.9889 |
| Shewanella benthica | Shewanella | 0.9714 |
| Dysgonomonas oryzarvi | Dysgonomonas | 0.8634 |
| Clostridium botulinum | Clostridium | 0.8073 |
| Shewanella atlantica | Shewanella | 0.6529 |
| Bacteroides xylanisolvens | Bacteroides | 0.6242 |
| Bacteroides fragilis | Bacteroides | 0.5314 |
| Fusobacterium hwasookii | Fusobacterium | 0.5180 |
| Dysgonomonas alginatilytica | Dysgonomonas | 0.3981 |
| Shewanella putrefaciens | Shewanella | 0.3924 |
| Clostridium sporogenes | Clostridium | 0.3403 |
| Photobacterium toruni | Photobacterium | 0.3258 |
| Bacteroides cellulosilyticus | Bacteroides | 0.3193 |
| Shewanella profunda | Shewanella | 0.2896 |
| Bacteroides graminisolvens | Bacteroides | 0.2722 |
| Fusobacterium varium | Fusobacterium | 0.2171 |
| Acinetobacter baumannii | Acinetobacter | 0.1481 |
| Aeromonas veronii | Aeromonas | 0.1111 |
Saved public metadata
{
"run_accession": "SRR26106569",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452512",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "60007",
"base_count": "98273615",
"fastq_bytes": "80000930",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/069/SRR26106569/SRR26106569_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "add55a77686cda77750b57a0f9d87f7874cbad68d82e0eea5dc8507f5c7c9f2c",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1647.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6353,
"elapsed_seconds": 1.6870171709999795,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 176,
"fraction": 0.88,
"adapters_found": {
"BC_FLANK": 171,
"1492R_rc": 1,
"NA_5p": 1,
"27F": 3
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}