SRR26106566 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides timonensis | Bacteroides | 31.9053 |
| Bacteroides stercoris | Bacteroides | 13.8297 |
| Spiroplasma eriocheiris | Spiroplasma | 10.2727 |
| Bacteroides ovatus | Bacteroides | 7.7054 |
| Shewanella sediminis | Shewanella | 5.2891 |
| Anaerorhabdus furcosa | Anaerorhabdus | 3.3161 |
| Bacteroides thetaiotaomicron | Bacteroides | 3.0870 |
| Shewanella hanedai | Shewanella | 2.9222 |
| Arcobacter trophiarum | Arcobacter | 2.4416 |
| Acinetobacter baumannii | Acinetobacter | 2.2330 |
| Shewanella canadensis | Shewanella | 1.8226 |
| Fusobacterium nucleatum | Fusobacterium | 1.7650 |
| Shewanella benthica | Shewanella | 1.3584 |
| Fusobacterium periodonticum | Fusobacterium | 1.1984 |
| Shewanella halifaxensis | Shewanella | 1.0864 |
| Citrobacter europaeus | Citrobacter | 0.9829 |
| Shewanella atlantica | Shewanella | 0.9608 |
| Citrobacter freundii | Citrobacter | 0.9036 |
| Chryseobacterium indologenes | Chryseobacterium | 0.7885 |
| Bacteroides xylanisolvens | Bacteroides | 0.6645 |
| Aeromonas veronii | Aeromonas | 0.5822 |
| Bacteroides fragilis | Bacteroides | 0.5597 |
| Brachymonas denitrificans | Brachymonas | 0.4864 |
| Shewanella putrefaciens | Shewanella | 0.4758 |
| Dysgonomonas macrotermitis | Dysgonomonas | 0.4716 |
| Flavobacterium columnare | Flavobacterium | 0.4716 |
| Fusobacterium ulcerans | Fusobacterium | 0.4141 |
| Acinetobacter indicus | Acinetobacter | 0.3389 |
| Bacteroides cellulosilyticus | Bacteroides | 0.3018 |
| Bacteroides graminisolvens | Bacteroides | 0.2859 |
| Fusobacterium gonidiaformans | Fusobacterium | 0.2776 |
| Arcobacter butzleri | Arcobacter | 0.2284 |
| Fusobacterium hwasookii | Fusobacterium | 0.2211 |
| Shewanella profunda | Shewanella | 0.1821 |
| Acinetobacter oleivorans | Acinetobacter | 0.1695 |
Saved public metadata
{
"run_accession": "SRR26106566",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452523",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "60108",
"base_count": "98705430",
"fastq_bytes": "78799452",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/066/SRR26106566/SRR26106566_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "8c35cd2211a0ef1af9ea74df23f831687305383e38fe4dea01837867f2e0e68a",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1647.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6319,
"elapsed_seconds": 1.653517261999923,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 169,
"fraction": 0.845,
"adapters_found": {
"BC_FLANK": 169
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}