SRR26106565 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides timonensis | Bacteroides | 29.6288 |
| Spiroplasma eriocheiris | Spiroplasma | 27.0708 |
| Bacteroides stercoris | Bacteroides | 9.3054 |
| Bacteroides ovatus | Bacteroides | 5.8390 |
| Citrobacter europaeus | Citrobacter | 4.1326 |
| Citrobacter freundii | Citrobacter | 3.8822 |
| Shewanella sediminis | Shewanella | 2.2306 |
| Mycoplasmoides gallisepticum | Mycoplasmoides | 1.9826 |
| Anaerorhabdus furcosa | Anaerorhabdus | 1.5774 |
| Shewanella hanedai | Shewanella | 1.3617 |
| Fusobacterium nucleatum | Fusobacterium | 1.1900 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.1338 |
| Bacteroides xylanisolvens | Bacteroides | 1.0838 |
| Dysgonomonas macrotermitis | Dysgonomonas | 1.0390 |
| Shewanella canadensis | Shewanella | 0.9759 |
| Hafnia psychrotolerans | Hafnia | 0.9605 |
| Shewanella halifaxensis | Shewanella | 0.7756 |
| Dysgonomonas oryzarvi | Dysgonomonas | 0.7337 |
| Fusobacterium periodonticum | Fusobacterium | 0.6377 |
| Shewanella atlantica | Shewanella | 0.5831 |
| Shewanella benthica | Shewanella | 0.5817 |
| Bacteroides fragilis | Bacteroides | 0.5253 |
| Bacteroides cellulosilyticus | Bacteroides | 0.5214 |
| Shewanella putrefaciens | Shewanella | 0.3799 |
| Mycoplasma yeatsii | Mycoplasma | 0.3526 |
| Acinetobacter baumannii | Acinetobacter | 0.3084 |
| Mycoplasma mycoides | Mycoplasma | 0.2731 |
| Dysgonomonas alginatilytica | Dysgonomonas | 0.2540 |
| Fusobacterium ulcerans | Fusobacterium | 0.2346 |
| Citrobacter braakii | Citrobacter | 0.2245 |
| Aeromonas veronii | Aeromonas | 0.2203 |
Saved public metadata
{
"run_accession": "SRR26106565",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452524",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "59933",
"base_count": "98464888",
"fastq_bytes": "79267180",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/065/SRR26106565/SRR26106565_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "4a98dbd60a709da86b2a8c918503a5b70450d40a5e1b170c0b10f416821ac752",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1651.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 8529,
"elapsed_seconds": 1.5713878290000594,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 172,
"fraction": 0.86,
"adapters_found": {
"27F": 1,
"BC_FLANK": 171
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}