SRR26106564 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides timonensis | Bacteroides | 26.0961 |
| Spiroplasma eriocheiris | Spiroplasma | 20.9239 |
| Clostridium thermosuccinogenes | Clostridium | 10.1691 |
| Bacteroides ovatus | Bacteroides | 7.7339 |
| Bacteroides stercoris | Bacteroides | 6.0970 |
| Anaerorhabdus furcosa | Anaerorhabdus | 3.9839 |
| Shewanella sediminis | Shewanella | 3.4887 |
| Shewanella hanedai | Shewanella | 2.3932 |
| Shewanella canadensis | Shewanella | 2.0282 |
| Brachymonas denitrificans | Brachymonas | 1.7241 |
| Vibrio navarrensis | Vibrio | 1.5484 |
| Shewanella halifaxensis | Shewanella | 1.5276 |
| Chryseobacterium indologenes | Chryseobacterium | 1.4982 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.1578 |
| Dysgonomonas macrotermitis | Dysgonomonas | 1.1249 |
| Shewanella benthica | Shewanella | 0.8987 |
| Acinetobacter baumannii | Acinetobacter | 0.8704 |
| Shewanella atlantica | Shewanella | 0.7373 |
| Spiroplasma apis | Spiroplasma | 0.6863 |
| Citrobacter freundii | Citrobacter | 0.6099 |
| Bacteroides xylanisolvens | Bacteroides | 0.5692 |
| Citrobacter europaeus | Citrobacter | 0.5620 |
| Bacteroides fragilis | Bacteroides | 0.5527 |
| Shewanella putrefaciens | Shewanella | 0.5191 |
| Clostridium botulinum | Clostridium | 0.5106 |
| Dysgonomonas oryzarvi | Dysgonomonas | 0.4290 |
| Clostridium cellulovorans | Clostridium | 0.3431 |
| Shewanella profunda | Shewanella | 0.3340 |
| Clostridium sporogenes | Clostridium | 0.3180 |
| Dysgonomonas alginatilytica | Dysgonomonas | 0.2958 |
| Bacteroides cellulosilyticus | Bacteroides | 0.2688 |
Saved public metadata
{
"run_accession": "SRR26106564",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452525",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "60171",
"base_count": "98784253",
"fastq_bytes": "79690477",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/064/SRR26106564/SRR26106564_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3bd6e1da20c1ec8c70d31142c66986fc647e6caaadb197aa00cdcda9df662ca4",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1650.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 7836,
"elapsed_seconds": 1.8429602389996944,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 169,
"fraction": 0.845,
"adapters_found": {
"BC_FLANK": 169
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}