SRR26106563 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides timonensis | Bacteroides | 32.2538 |
| Bacteroides stercoris | Bacteroides | 17.6115 |
| Spiroplasma eriocheiris | Spiroplasma | 11.3872 |
| Bacteroides ovatus | Bacteroides | 9.4420 |
| Anaerorhabdus furcosa | Anaerorhabdus | 4.6208 |
| Shewanella sediminis | Shewanella | 4.1458 |
| Shewanella hanedai | Shewanella | 2.7030 |
| Shewanella canadensis | Shewanella | 2.0915 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.7731 |
| Shewanella halifaxensis | Shewanella | 1.5570 |
| Citrobacter freundii | Citrobacter | 1.3480 |
| Shewanella benthica | Shewanella | 1.2531 |
| Fusobacterium nucleatum | Fusobacterium | 1.2147 |
| Citrobacter europaeus | Citrobacter | 1.0096 |
| Bacteroides xylanisolvens | Bacteroides | 0.9235 |
| Shewanella atlantica | Shewanella | 0.8890 |
| Bacteroides fragilis | Bacteroides | 0.8443 |
| Ihubacter massiliensis | Ihubacter | 0.8016 |
| Fusobacterium periodonticum | Fusobacterium | 0.7606 |
| Shewanella putrefaciens | Shewanella | 0.5445 |
| Bacteroides cellulosilyticus | Bacteroides | 0.4765 |
| Dysgonomonas macrotermitis | Dysgonomonas | 0.4683 |
| Shewanella profunda | Shewanella | 0.4350 |
| Spiroplasma apis | Spiroplasma | 0.4084 |
| Dysgonomonas oryzarvi | Dysgonomonas | 0.3647 |
| Fusobacterium ulcerans | Fusobacterium | 0.2686 |
| Acinetobacter baumannii | Acinetobacter | 0.2200 |
| Fusobacterium gonidiaformans | Fusobacterium | 0.1837 |
Saved public metadata
{
"run_accession": "SRR26106563",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452526",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "60063",
"base_count": "98560650",
"fastq_bytes": "78401760",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/063/SRR26106563/SRR26106563_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "9e90e083c27ba04fad058e6c94b6b19cbb57b201333949acc1850c40bc87970c",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1648.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 7163,
"elapsed_seconds": 1.5891407700000855,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 169,
"fraction": 0.845,
"adapters_found": {
"BC_FLANK": 168,
"NA_5p": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}