SRR26106562 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides timonensis | Bacteroides | 34.8539 |
| Bacteroides stercoris | Bacteroides | 15.3416 |
| Anaerorhabdus furcosa | Anaerorhabdus | 9.4519 |
| Bacteroides ovatus | Bacteroides | 8.8236 |
| Dysgonomonas macrotermitis | Dysgonomonas | 5.1802 |
| Dysgonomonas oryzarvi | Dysgonomonas | 3.0218 |
| Williamsoniiplasma somnilux | Williamsoniiplasma | 2.4824 |
| Dysgonomonas alginatilytica | Dysgonomonas | 2.2349 |
| Hafnia psychrotolerans | Hafnia | 1.9100 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.8387 |
| Shewanella sediminis | Shewanella | 1.3524 |
| Brenneria alni | Brenneria | 0.9941 |
| Fuerstiella marisgermanici | Fuerstiella | 0.9829 |
| Rhodopirellula rubra | Rhodopirellula | 0.8644 |
| Citrobacter freundii | Citrobacter | 0.8566 |
| Bacteroides fragilis | Bacteroides | 0.8430 |
| Shewanella canadensis | Shewanella | 0.8028 |
| Bacteroides xylanisolvens | Bacteroides | 0.7624 |
| Bacteroides cellulosilyticus | Bacteroides | 0.6836 |
| Williamsoniiplasma luminosum | Williamsoniiplasma | 0.6661 |
| Shewanella hanedai | Shewanella | 0.6565 |
| Rhodobacter aestuarii | Rhodobacter | 0.6556 |
| Citrobacter europaeus | Citrobacter | 0.5731 |
| Rhodobacter ferrireducens | Rhodobacter | 0.5283 |
| Dysgonomonas capnocytophagoides | Dysgonomonas | 0.5050 |
| Shewanella benthica | Shewanella | 0.5032 |
| Bacteroides graminisolvens | Bacteroides | 0.4218 |
| Rhodopirellula lusitana | Rhodopirellula | 0.4201 |
| Williamsoniiplasma lucivorax | Williamsoniiplasma | 0.4009 |
| Shewanella halifaxensis | Shewanella | 0.3486 |
| Dysgonomonas mossii | Dysgonomonas | 0.2911 |
| Aeromonas veronii | Aeromonas | 0.2681 |
| Acinetobacter baumannii | Acinetobacter | 0.2457 |
| Allobosea thiooxidans | Allobosea | 0.2346 |
Saved public metadata
{
"run_accession": "SRR26106562",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452527",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "59847",
"base_count": "97887644",
"fastq_bytes": "81243072",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/062/SRR26106562/SRR26106562_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "c5760b93a036075a13e24d43201b35624d653f4a3f2484f75a09e56ce02eaf29",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1645.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 10945,
"elapsed_seconds": 2.3782266310000004,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 161,
"fraction": 0.805,
"adapters_found": {
"BC_FLANK": 161
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}