SRR26106561 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides timonensis | Bacteroides | 26.4287 |
| Bacteroides stercoris | Bacteroides | 17.3705 |
| Spiroplasma eriocheiris | Spiroplasma | 12.9936 |
| Bacteroides ovatus | Bacteroides | 8.8514 |
| Hafnia psychrotolerans | Hafnia | 7.7725 |
| Dysgonomonas macrotermitis | Dysgonomonas | 4.6729 |
| Anaerorhabdus furcosa | Anaerorhabdus | 3.9488 |
| Dysgonomonas oryzarvi | Dysgonomonas | 2.4413 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.7038 |
| Shewanella sediminis | Shewanella | 1.6388 |
| Dysgonomonas alginatilytica | Dysgonomonas | 1.4844 |
| Shewanella hanedai | Shewanella | 0.9672 |
| Fusobacterium nucleatum | Fusobacterium | 0.9223 |
| Shewanella canadensis | Shewanella | 0.8735 |
| Acinetobacter baumannii | Acinetobacter | 0.8479 |
| Bacteroides xylanisolvens | Bacteroides | 0.8004 |
| Bacteroides fragilis | Bacteroides | 0.7093 |
| Shewanella halifaxensis | Shewanella | 0.7068 |
| Fusobacterium periodonticum | Fusobacterium | 0.6946 |
| Ihubacter massiliensis | Ihubacter | 0.5154 |
| Bacteroides cellulosilyticus | Bacteroides | 0.4477 |
| Dysgonomonas capnocytophagoides | Dysgonomonas | 0.4296 |
| Hafnia paralvei | Hafnia | 0.3884 |
| Shewanella benthica | Shewanella | 0.3851 |
| Hafnia alvei | Hafnia | 0.3269 |
| Chryseobacterium indologenes | Chryseobacterium | 0.2993 |
| Shewanella atlantica | Shewanella | 0.2835 |
| Shewanella putrefaciens | Shewanella | 0.2827 |
| Fusobacterium ulcerans | Fusobacterium | 0.2204 |
| Bacteroides intestinalis | Bacteroides | 0.2142 |
| Bacteroides helcogenes | Bacteroides | 0.2036 |
| Fusobacterium hwasookii | Fusobacterium | 0.1746 |
Saved public metadata
{
"run_accession": "SRR26106561",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452528",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "60027",
"base_count": "98537437",
"fastq_bytes": "79693971",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/061/SRR26106561/SRR26106561_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "ed4766326ed3fb8983a704fb5564dcf341eed4d588b1e3ac786c4c221ee5cc85",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1650.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 7883,
"elapsed_seconds": 1.6089657310001257,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 168,
"fraction": 0.84,
"adapters_found": {
"BC_FLANK": 167,
"1492R_rc": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}