SRR26106560 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Spiroplasma eriocheiris | Spiroplasma | 26.3163 |
| Bacteroides timonensis | Bacteroides | 21.1592 |
| Vibrio navarrensis | Vibrio | 11.6744 |
| Bacteroides stercoris | Bacteroides | 7.9719 |
| Bacteroides ovatus | Bacteroides | 5.6722 |
| Anaerorhabdus furcosa | Anaerorhabdus | 2.6452 |
| Dysgonomonas macrotermitis | Dysgonomonas | 2.4154 |
| Chryseobacterium indologenes | Chryseobacterium | 1.7380 |
| Citrobacter freundii | Citrobacter | 1.6520 |
| Citrobacter europaeus | Citrobacter | 1.6376 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.3276 |
| Dysgonomonas oryzarvi | Dysgonomonas | 1.2879 |
| Shewanella sediminis | Shewanella | 1.1253 |
| Vibrio alginolyticus | Vibrio | 1.0844 |
| Shewanella hanedai | Shewanella | 1.0643 |
| Vibrio qinghaiensis | Vibrio | 0.9929 |
| Ihubacter massiliensis | Ihubacter | 0.7800 |
| Acidovorax facilis | Acidovorax | 0.7571 |
| Fusobacterium nucleatum | Fusobacterium | 0.7335 |
| Bacteroides xylanisolvens | Bacteroides | 0.6889 |
| Dysgonomonas alginatilytica | Dysgonomonas | 0.6889 |
| Shewanella canadensis | Shewanella | 0.5858 |
| Vibrio vulnificus | Vibrio | 0.5815 |
| Shewanella halifaxensis | Shewanella | 0.5450 |
| Spiroplasma apis | Spiroplasma | 0.5372 |
| Bacteroides fragilis | Bacteroides | 0.4864 |
| Acinetobacter baumannii | Acinetobacter | 0.4409 |
| Spiroplasma culicicola | Spiroplasma | 0.3784 |
| Shewanella benthica | Shewanella | 0.3726 |
| Acidovorax avenae | Acidovorax | 0.3725 |
| Bacteroides cellulosilyticus | Bacteroides | 0.3626 |
| Fusobacterium periodonticum | Fusobacterium | 0.3432 |
| Shewanella atlantica | Shewanella | 0.2663 |
| Vibrio coralliilyticus | Vibrio | 0.2577 |
| Spiroplasma chinense | Spiroplasma | 0.2374 |
| Bacteroides graminisolvens | Bacteroides | 0.2371 |
| Acidovorax delafieldii | Acidovorax | 0.2092 |
| Acidovorax cattleyae | Acidovorax | 0.1873 |
| Dysgonomonas capnocytophagoides | Dysgonomonas | 0.1861 |
Saved public metadata
{
"run_accession": "SRR26106560",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452529",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "60067",
"base_count": "98889945",
"fastq_bytes": "80445741",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/060/SRR26106560/SRR26106560_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "9ec23d6a18e42a734e9de039d3c31a9299d49f076af07eb5cc682c7c897bf28e",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1655.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 8057,
"elapsed_seconds": 1.6306007930002124,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 165,
"fraction": 0.825,
"adapters_found": {
"BC_FLANK": 164,
"27F": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}