SRR26106558 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides timonensis | Bacteroides | 29.8854 |
| Spiroplasma eriocheiris | Spiroplasma | 18.3190 |
| Bacteroides stercoris | Bacteroides | 14.9250 |
| Bacteroides ovatus | Bacteroides | 7.2631 |
| Anaerorhabdus furcosa | Anaerorhabdus | 4.1008 |
| Shewanella sediminis | Shewanella | 3.8193 |
| Chryseobacterium indologenes | Chryseobacterium | 2.9424 |
| Shewanella hanedai | Shewanella | 2.6748 |
| Shewanella canadensis | Shewanella | 1.9177 |
| Deefgea chitinilytica | Deefgea | 1.7073 |
| Shewanella halifaxensis | Shewanella | 1.2463 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.2454 |
| Shewanella benthica | Shewanella | 1.0363 |
| Shewanella atlantica | Shewanella | 0.8826 |
| Acinetobacter baumannii | Acinetobacter | 0.8708 |
| Brachymonas denitrificans | Brachymonas | 0.7903 |
| Bacteroides xylanisolvens | Bacteroides | 0.7055 |
| Shewanella putrefaciens | Shewanella | 0.5592 |
| Flavobacterium columnare | Flavobacterium | 0.5069 |
| Shewanella profunda | Shewanella | 0.4985 |
| Ihubacter massiliensis | Ihubacter | 0.4846 |
| Bacteroides cellulosilyticus | Bacteroides | 0.4679 |
| Dysgonomonas macrotermitis | Dysgonomonas | 0.4604 |
| Bacteroides fragilis | Bacteroides | 0.4026 |
| Dysgonomonas oryzarvi | Dysgonomonas | 0.3589 |
| Bacteroides graminisolvens | Bacteroides | 0.3575 |
| Citrobacter freundii | Citrobacter | 0.3374 |
| Citrobacter europaeus | Citrobacter | 0.2780 |
| Spiroplasma apis | Spiroplasma | 0.2599 |
| Dysgonomonas alginatilytica | Dysgonomonas | 0.2170 |
| Paludihabitans psychrotolerans | Paludihabitans | 0.2084 |
| Chryseobacterium balustinum | Chryseobacterium | 0.1814 |
| Acinetobacter chinensis | Acinetobacter | 0.0893 |
Saved public metadata
{
"run_accession": "SRR26106558",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452513",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "59950",
"base_count": "98386460",
"fastq_bytes": "78707198",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/058/SRR26106558/SRR26106558_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "e3f1f90339d89ae5f3d416654b736313088333747155ea594e90e21564c2067e",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1648.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6508,
"elapsed_seconds": 1.8065611310003078,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 178,
"fraction": 0.89,
"adapters_found": {
"BC_FLANK": 177,
"27F": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}