SRR26106556 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides timonensis | Bacteroides | 32.5184 |
| Bacteroides stercoris | Bacteroides | 13.1111 |
| Bacteroides ovatus | Bacteroides | 8.3652 |
| Spiroplasma eriocheiris | Spiroplasma | 7.5194 |
| Clostridium thermosuccinogenes | Clostridium | 6.3734 |
| Shewanella sediminis | Shewanella | 4.3290 |
| Anaerorhabdus furcosa | Anaerorhabdus | 4.2488 |
| Dysgonomonas macrotermitis | Dysgonomonas | 2.5947 |
| Shewanella hanedai | Shewanella | 2.4585 |
| Shewanella canadensis | Shewanella | 1.6847 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.5482 |
| Dysgonomonas oryzarvi | Dysgonomonas | 1.4191 |
| Shewanella halifaxensis | Shewanella | 1.1139 |
| Shewanella benthica | Shewanella | 1.1079 |
| Acinetobacter baumannii | Acinetobacter | 1.0698 |
| Bacteroides xylanisolvens | Bacteroides | 1.0456 |
| Fusobacterium nucleatum | Fusobacterium | 0.9755 |
| Chryseobacterium indologenes | Chryseobacterium | 0.8788 |
| Shewanella atlantica | Shewanella | 0.7463 |
| Bacteroides fragilis | Bacteroides | 0.7051 |
| Vibrio navarrensis | Vibrio | 0.6419 |
| Dysgonomonas alginatilytica | Dysgonomonas | 0.6006 |
| Shewanella putrefaciens | Shewanella | 0.5802 |
| Bacteroides cellulosilyticus | Bacteroides | 0.4742 |
| Ihubacter massiliensis | Ihubacter | 0.4585 |
| Bacteroides graminisolvens | Bacteroides | 0.3908 |
| Fusobacterium periodonticum | Fusobacterium | 0.3887 |
| Acidovorax facilis | Acidovorax | 0.3753 |
| Clostridium botulinum | Clostridium | 0.3592 |
| Fusobacterium ulcerans | Fusobacterium | 0.3503 |
| Acidovorax avenae | Acidovorax | 0.3280 |
| Dysgonomonas capnocytophagoides | Dysgonomonas | 0.3146 |
| Brachymonas denitrificans | Brachymonas | 0.2827 |
| Clostridium sporogenes | Clostridium | 0.2520 |
| Acidovorax delafieldii | Acidovorax | 0.2120 |
| Acidovorax cattleyae | Acidovorax | 0.1774 |
Saved public metadata
{
"run_accession": "SRR26106556",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452532",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "60054",
"base_count": "98382757",
"fastq_bytes": "79093352",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/056/SRR26106556/SRR26106556_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "e088a48a93665f63b3b2101d92fa24cd26626dcefc48dec3830f45c615feaa05",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1647.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6759,
"elapsed_seconds": 1.7842660299997988,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 172,
"fraction": 0.86,
"adapters_found": {
"BC_FLANK": 171,
"1492R_rc": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}