SRR26106553 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides timonensis | Bacteroides | 24.1528 |
| Spiroplasma eriocheiris | Spiroplasma | 22.3510 |
| Bacteroides stercoris | Bacteroides | 12.5432 |
| Clostridium thermosuccinogenes | Clostridium | 7.7310 |
| Bacteroides ovatus | Bacteroides | 6.9813 |
| Erysipelothrix larvae | Erysipelothrix | 2.6924 |
| Enterobacter asburiae | Enterobacter | 2.4901 |
| Shewanella sediminis | Shewanella | 2.4618 |
| Enterobacter mori | Enterobacter | 2.1342 |
| Shewanella hanedai | Shewanella | 1.6548 |
| Citrobacter freundii | Citrobacter | 1.5977 |
| Shewanella canadensis | Shewanella | 1.4686 |
| Erysipelothrix rhusiopathiae | Erysipelothrix | 1.3852 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.3491 |
| Citrobacter europaeus | Citrobacter | 1.0172 |
| Dysgonomonas macrotermitis | Dysgonomonas | 0.9492 |
| Shewanella halifaxensis | Shewanella | 0.9268 |
| Bacteroides xylanisolvens | Bacteroides | 0.8439 |
| Brachymonas denitrificans | Brachymonas | 0.6508 |
| Shewanella benthica | Shewanella | 0.6278 |
| Dysgonomonas oryzarvi | Dysgonomonas | 0.4590 |
| Bacteroides fragilis | Bacteroides | 0.4542 |
| Shewanella atlantica | Shewanella | 0.4512 |
| Ihubacter massiliensis | Ihubacter | 0.4178 |
| Erysipelothrix piscisicarius | Erysipelothrix | 0.3814 |
| Bacteroides graminisolvens | Bacteroides | 0.3413 |
| Shewanella putrefaciens | Shewanella | 0.3214 |
| Dysgonomonas alginatilytica | Dysgonomonas | 0.2951 |
| Anaerorhabdus furcosa | Anaerorhabdus | 0.2732 |
| Clostridium sporogenes | Clostridium | 0.2652 |
| Shewanella profunda | Shewanella | 0.2190 |
| Acinetobacter baumannii | Acinetobacter | 0.1125 |
Saved public metadata
{
"run_accession": "SRR26106553",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452535",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "60013",
"base_count": "98755501",
"fastq_bytes": "80229928",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/053/SRR26106553/SRR26106553_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "bd3d6efda19134a6b33c80fadab6f3d2bdebf581e77dca99c653d788484b0d94",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1654.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 7430,
"elapsed_seconds": 1.6421762949998993,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 177,
"fraction": 0.885,
"adapters_found": {
"BC_FLANK": 177
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}