SRR26106549 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides timonensis | Bacteroides | 29.7603 |
| Bacteroides stercoris | Bacteroides | 14.9634 |
| Spiroplasma eriocheiris | Spiroplasma | 10.3764 |
| Bacteroides ovatus | Bacteroides | 7.4717 |
| Anaerorhabdus furcosa | Anaerorhabdus | 5.7578 |
| Aeromonas veronii | Aeromonas | 4.2493 |
| Shewanella sediminis | Shewanella | 3.5831 |
| Shewanella hanedai | Shewanella | 2.2272 |
| Dysgonomonas macrotermitis | Dysgonomonas | 2.0201 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.9913 |
| Shewanella canadensis | Shewanella | 1.9166 |
| Acinetobacter baumannii | Acinetobacter | 1.8936 |
| Shewanella halifaxensis | Shewanella | 1.6231 |
| Chryseobacterium indologenes | Chryseobacterium | 1.4856 |
| Bacteroides xylanisolvens | Bacteroides | 1.2591 |
| Dysgonomonas oryzarvi | Dysgonomonas | 1.1739 |
| Shewanella benthica | Shewanella | 1.0625 |
| Shewanella atlantica | Shewanella | 0.7938 |
| Fusobacterium nucleatum | Fusobacterium | 0.7186 |
| Bacteroides fragilis | Bacteroides | 0.6959 |
| Dysgonomonas alginatilytica | Dysgonomonas | 0.6939 |
| Citrobacter freundii | Citrobacter | 0.6576 |
| Shewanella putrefaciens | Shewanella | 0.5078 |
| Citrobacter europaeus | Citrobacter | 0.4432 |
| Fusobacterium periodonticum | Fusobacterium | 0.4201 |
| Bacteroides cellulosilyticus | Bacteroides | 0.3630 |
| Arcobacter trophiarum | Arcobacter | 0.3079 |
| Ihubacter massiliensis | Ihubacter | 0.2848 |
| Bacteroides graminisolvens | Bacteroides | 0.2813 |
| Dysgonomonas capnocytophagoides | Dysgonomonas | 0.2458 |
| Shewanella profunda | Shewanella | 0.2094 |
| Bacteroides intestinalis | Bacteroides | 0.1996 |
| Fusobacterium ulcerans | Fusobacterium | 0.1930 |
| Acinetobacter chinensis | Acinetobacter | 0.1693 |
Saved public metadata
{
"run_accession": "SRR26106549",
"study_accession": "PRJNA1018822",
"sample_accession": "SAMN37452517",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "PromethION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "60025",
"base_count": "98353468",
"fastq_bytes": "79937575",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR261/049/SRR26106549/SRR26106549_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "80501ac846fe701bab64f9ddb660450dd034534538a8a22143cc7ebca943f59b",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1648.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6842,
"elapsed_seconds": 1.6314213269997708,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 162,
"fraction": 0.81,
"adapters_found": {
"BC_FLANK": 162
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}