SRR24640446 · Gut microbiome
Gut microbiome of the cold-water Tolerant Piaractus Mesopotamicus individual Mb14
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Cetobacterium somerae | Cetobacterium | 36.3744 |
| Bacteroides fragilis | Bacteroides | 8.3735 |
| Akkermansia muciniphila | Akkermansia | 7.6573 |
| Bacteroides zoogleoformans | Bacteroides | 7.3742 |
| Bacteroides cellulosilyticus | Bacteroides | 6.8977 |
| Cetobacterium ceti | Cetobacterium | 6.4254 |
| Bacteroides ovatus | Bacteroides | 3.7610 |
| Terrisporobacter mayombei | Terrisporobacter | 3.5600 |
| Plesiomonas shigelloides | Plesiomonas | 3.4836 |
| Bacteroides xylanisolvens | Bacteroides | 3.1321 |
| Bacteroides nordii | Bacteroides | 2.3875 |
| Bacteroides faecichinchillae | Bacteroides | 2.0623 |
| Bacteroides acidifaciens | Bacteroides | 1.3204 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.0515 |
| Bacteroides eggerthii | Bacteroides | 0.5915 |
| Bacteroides uniformis | Bacteroides | 0.5100 |
| Clostridium botulinum | Clostridium | 0.4871 |
| Parabacteroides faecis | Parabacteroides | 0.4572 |
| Clostridium carnis | Clostridium | 0.4360 |
| Parabacteroides chongii | Parabacteroides | 0.4297 |
| Clostridium subterminale | Clostridium | 0.4195 |
| Clostridium scatologenes | Clostridium | 0.4020 |
| Parabacteroides gordonii | Parabacteroides | 0.2835 |
| Bacteroides caecimuris | Bacteroides | 0.2651 |
| Clostridium fallax | Clostridium | 0.2647 |
| Clostridium septicum | Clostridium | 0.2327 |
| Bacteroides rodentium | Bacteroides | 0.2298 |
| Bacteroides faecis | Bacteroides | 0.2266 |
| Clostridium felsineum | Clostridium | 0.1987 |
| Terrisporobacter petrolearius | Terrisporobacter | 0.1884 |
| Parabacteroides merdae | Parabacteroides | 0.1830 |
| Clostridium sulfidigenes | Clostridium | 0.1727 |
| Parabacteroides distasonis | Parabacteroides | 0.1609 |
Saved public metadata
{
"run_accession": "SRR24640446",
"study_accession": "PRJNA973996",
"sample_accession": "SAMN35155582",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "130018",
"base_count": "190071295",
"fastq_bytes": "165716799",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR246/046/SRR24640446/SRR24640446_1.fastq.gz",
"sample_title": "Gut microbiome of the cold-water Tolerant Piaractus Mesopotamicus individual Mb14",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "05177c6d2940b02ba1004088c87d0d96aab9d33dc9d943ababcf93feda688c92",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1463.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4399,
"elapsed_seconds": 1.5213449980001315,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 11,
"fraction": 0.055,
"adapters_found": {
"27F": 10,
"BC_FLANK": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}