SRR24261118 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Sarcina ventriculi | Sarcina | 36.7030 |
| Sarcina maxima | Sarcina | 22.3740 |
| Streptococcus salivarius | Streptococcus | 5.0999 |
| Allobaculum stercoricanis | Allobaculum | 4.2564 |
| Veillonella parvula | Veillonella | 3.8159 |
| Streptococcus downei | Streptococcus | 3.4539 |
| Streptococcus mitis | Streptococcus | 3.4167 |
| Megasphaera elsdenii | Megasphaera | 3.1444 |
| Streptococcus sobrinus | Streptococcus | 2.4691 |
| Streptococcus suis | Streptococcus | 1.7637 |
| Streptococcus alactolyticus | Streptococcus | 1.6306 |
| Streptococcus pyogenes | Streptococcus | 1.5106 |
| Veillonella infantium | Veillonella | 1.0301 |
| Megasphaera cerevisiae | Megasphaera | 0.9553 |
| Lactobacillus psittaci | Lactobacillus | 0.9402 |
| Megasphaera hexanoica | Megasphaera | 0.8969 |
| Marseilla massiliensis | Marseilla | 0.8034 |
| Megasphaera stantonii | Megasphaera | 0.7839 |
| Streptococcus pneumoniae | Streptococcus | 0.7715 |
| Streptococcus gordonii | Streptococcus | 0.7279 |
| Streptococcus hyointestinalis | Streptococcus | 0.6821 |
| Megasphaera coli | Megasphaera | 0.6233 |
| Veillonella atypica | Veillonella | 0.5708 |
| Veillonella dispar | Veillonella | 0.5384 |
| Streptococcus equinus | Streptococcus | 0.5198 |
| Streptococcus anginosus | Streptococcus | 0.5185 |
Saved public metadata
{
"run_accession": "SRR24261118",
"study_accession": "PRJNA956819",
"sample_accession": "SAMN34230129",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "22405",
"base_count": "30497151",
"fastq_bytes": "29356768",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR242/018/SRR24261118/SRR24261118_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "538beb34dd8455d6a9032ec14d98e7b54afea0fc6b868a585cf30dde24925a21",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1361.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 14025,
"elapsed_seconds": 1.3258336029998645,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 9,
"fraction": 0.045,
"adapters_found": {
"27F": 9
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}