SRR24261116 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Sarcina ventriculi | Sarcina | 35.2858 |
| Sarcina maxima | Sarcina | 19.9615 |
| Streptococcus salivarius | Streptococcus | 5.0526 |
| Allobaculum stercoricanis | Allobaculum | 4.4669 |
| Neglectibacter timonensis | Neglectibacter | 3.9827 |
| Streptococcus mitis | Streptococcus | 3.2996 |
| Muribaculum intestinale | Muribaculum | 3.1297 |
| Streptococcus downei | Streptococcus | 2.6417 |
| Streptococcus sobrinus | Streptococcus | 2.6089 |
| Gabonibacter massiliensis | Gabonibacter | 2.3930 |
| Veillonella parvula | Veillonella | 2.3008 |
| Streptococcus alactolyticus | Streptococcus | 2.0720 |
| Megasphaera elsdenii | Megasphaera | 1.8833 |
| Streptococcus suis | Streptococcus | 1.6525 |
| Streptococcus pyogenes | Streptococcus | 1.5243 |
| Megasphaera cerevisiae | Megasphaera | 0.8276 |
| Streptococcus pneumoniae | Streptococcus | 0.7372 |
| Streptococcus hyointestinalis | Streptococcus | 0.7266 |
| Lactobacillus psittaci | Lactobacillus | 0.6964 |
| Megasphaera hexanoica | Megasphaera | 0.6883 |
| Veillonella dispar | Veillonella | 0.6258 |
| Marseilla massiliensis | Marseilla | 0.5892 |
| Streptococcus anginosus | Streptococcus | 0.5795 |
| Megasphaera stantonii | Megasphaera | 0.4652 |
| Streptococcus gordonii | Streptococcus | 0.4623 |
| Streptococcus gallolyticus | Streptococcus | 0.4367 |
| Veillonella atypica | Veillonella | 0.3825 |
| Veillonella infantium | Veillonella | 0.3232 |
| Staphylococcus aureus | Staphylococcus | 0.2041 |
Saved public metadata
{
"run_accession": "SRR24261116",
"study_accession": "PRJNA956819",
"sample_accession": "SAMN34230131",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "20965",
"base_count": "28513777",
"fastq_bytes": "27296960",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR242/016/SRR24261116/SRR24261116_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "e29e63aba4ef9d63eb211ca520b93e2a07965b4c7b7f74d4c4b61f7162eb6107",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1358.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 11576,
"elapsed_seconds": 1.3845644510001875,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 11,
"fraction": 0.055,
"adapters_found": {
"27F": 11
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}