SRR24261108 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Ruminococcus champanellensis | Ruminococcus | 20.8984 |
| Eubacterium ramulus | Eubacterium | 9.2772 |
| Rhodopseudomonas palustris | Rhodopseudomonas | 7.5433 |
| Prevotella ruminicola | Prevotella | 7.3045 |
| Ruminococcus flavefaciens | Ruminococcus | 6.1419 |
| Akkermansia muciniphila | Akkermansia | 4.5561 |
| Bradyrhizobium elkanii | Bradyrhizobium | 4.1185 |
| Muribaculum intestinale | Muribaculum | 3.9185 |
| Pseudomonas moorei | Pseudomonas | 2.9921 |
| Prevotella brevis | Prevotella | 2.9486 |
| Prevotella heparinolytica | Prevotella | 2.7546 |
| Pseudomonas azotoformans | Pseudomonas | 2.6538 |
| Akkermansia glycaniphila | Akkermansia | 2.5384 |
| Allobaculum stercoricanis | Allobaculum | 2.3226 |
| Rhodopseudomonas boonkerdii | Rhodopseudomonas | 2.0399 |
| Ruminococcus callidus | Ruminococcus | 1.9751 |
| Pseudomonas aeruginosa | Pseudomonas | 1.8029 |
| Bradyrhizobium betae | Bradyrhizobium | 1.7843 |
| Pseudomonas fragi | Pseudomonas | 1.2309 |
| Bradyrhizobium oligotrophicum | Bradyrhizobium | 1.2229 |
| Ruminococcus bromii | Ruminococcus | 1.1943 |
| Agrobacterium tumefaciens | Agrobacterium | 1.1402 |
| Prevotella buccalis | Prevotella | 0.9891 |
| Prevotella intermedia | Prevotella | 0.9804 |
| Prevotella buccae | Prevotella | 0.8466 |
| Pseudomonas chlororaphis | Pseudomonas | 0.8442 |
| Eubacterium coprostanoligenes | Eubacterium | 0.8425 |
| Pseudomonas monteilii | Pseudomonas | 0.7398 |
| Pseudomonas mendocina | Pseudomonas | 0.5259 |
| Bradyrhizobium icense | Bradyrhizobium | 0.5245 |
| Bradyrhizobium paxllaeri | Bradyrhizobium | 0.5245 |
| Rhodopseudomonas faecalis | Rhodopseudomonas | 0.5066 |
| Janthinobacterium svalbardensis | Janthinobacterium | 0.3167 |
Saved public metadata
{
"run_accession": "SRR24261108",
"study_accession": "PRJNA956819",
"sample_accession": "SAMN34230138",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "25582",
"base_count": "34882293",
"fastq_bytes": "34487369",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR242/008/SRR24261108/SRR24261108_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "c14a7e1cc60f71960634416f439c2763536a8e18ff43cd70f4a6eea6ee5c6cbb",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1368.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 15043,
"elapsed_seconds": 1.3355932810000013,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 6,
"fraction": 0.03,
"adapters_found": {
"27F": 6
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}