SRR23495480 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus johnsonii | Lactobacillus | 22.2698 |
| Limosilactobacillus reuteri | Limosilactobacillus | 18.4479 |
| Lactobacillus taiwanensis | Lactobacillus | 10.6325 |
| Muribaculum intestinale | Muribaculum | 7.5893 |
| Prevotella heparinolytica | Prevotella | 5.2741 |
| Lactobacillus acetotolerans | Lactobacillus | 3.8534 |
| Lactobacillus delbrueckii | Lactobacillus | 3.7157 |
| Prevotella ruminicola | Prevotella | 2.9498 |
| Prevotella brevis | Prevotella | 2.1605 |
| Prevotella loescheii | Prevotella | 1.9067 |
| Lactobacillus psittaci | Lactobacillus | 1.4672 |
| Prevotella buccae | Prevotella | 1.4583 |
| Allobaculum stercoricanis | Allobaculum | 1.4538 |
| Ligilactobacillus murinus | Ligilactobacillus | 1.2564 |
| Prevotella fusca | Prevotella | 1.2147 |
| Ruminiclostridium cellobioparum | Ruminiclostridium | 1.1891 |
| Ruminiclostridium cellulolyticum | Ruminiclostridium | 1.1441 |
| Prevotella oris | Prevotella | 1.0664 |
| Alistipes putredinis | Alistipes | 1.0550 |
| Lactobacillus gasseri | Lactobacillus | 0.9456 |
| Lactobacillus hominis | Lactobacillus | 0.9242 |
| Odoribacter splanchnicus | Odoribacter | 0.8449 |
| Ruminiclostridium hungatei | Ruminiclostridium | 0.8102 |
| Prevotella intermedia | Prevotella | 0.7503 |
| Lactobacillus helveticus | Lactobacillus | 0.6689 |
| Prevotella stercorea | Prevotella | 0.6333 |
| Prevotella copri | Prevotella | 0.6330 |
| Alistipes dispar | Alistipes | 0.5223 |
| Prevotella buccalis | Prevotella | 0.5143 |
| Ligilactobacillus agilis | Ligilactobacillus | 0.4736 |
| Ligilactobacillus aviarius | Ligilactobacillus | 0.4725 |
| Prevotella corporis | Prevotella | 0.4701 |
| Alistipes finegoldii | Alistipes | 0.4660 |
| Odoribacter laneus | Odoribacter | 0.4321 |
| Schaedlerella arabinosiphila | Schaedlerella | 0.3340 |
Saved public metadata
{
"run_accession": "SRR23495480",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322825",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17558826",
"fastq_bytes": "16868064",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/080/SRR23495480/SRR23495480_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "ac700624bf5f7abea28e380c6172daf5ba4c6894c1f7cca79d321a6064b27c92",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1451,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 6920,
"elapsed_seconds": 1.019474541999898,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}