SRR23495477 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia producta | Blautia | 20.4639 |
| Lactobacillus johnsonii | Lactobacillus | 8.2920 |
| Ligilactobacillus murinus | Ligilactobacillus | 6.4054 |
| Blautia hansenii | Blautia | 6.3774 |
| Ruminococcus champanellensis | Ruminococcus | 5.4283 |
| Blautia luti | Blautia | 4.9372 |
| Faecalibaculum rodentium | Faecalibaculum | 4.0138 |
| Neglectibacter timonensis | Neglectibacter | 3.7462 |
| Lactobacillus taiwanensis | Lactobacillus | 3.5198 |
| Bacteroides uniformis | Bacteroides | 3.2559 |
| Parabacteroides goldsteinii | Parabacteroides | 3.0053 |
| Ruminococcus gauvreauii | Ruminococcus | 2.3965 |
| Bacteroides ovatus | Bacteroides | 2.0175 |
| Akkermansia muciniphila | Akkermansia | 1.9113 |
| Ligilactobacillus aviarius | Ligilactobacillus | 1.8687 |
| Bacteroides zoogleoformans | Bacteroides | 1.8580 |
| Agathobaculum desmolans | Agathobaculum | 1.8349 |
| Ligilactobacillus agilis | Ligilactobacillus | 1.7794 |
| Muribaculum intestinale | Muribaculum | 1.7335 |
| Alistipes putredinis | Alistipes | 1.6437 |
| Blautia hominis | Blautia | 1.4689 |
| Lactobacillus delbrueckii | Lactobacillus | 1.4199 |
| Blautia schinkii | Blautia | 1.4162 |
| Bacteroides fragilis | Bacteroides | 1.3352 |
| Bacteroides rodentium | Bacteroides | 1.2825 |
| Lactobacillus psittaci | Lactobacillus | 1.1468 |
| Lactobacillus acetotolerans | Lactobacillus | 1.1414 |
| Marvinbryantia formatexigens | Marvinbryantia | 1.0355 |
| Blautia glucerasea | Blautia | 0.8919 |
| Blautia faecis | Blautia | 0.8792 |
| Blautia marasmi | Blautia | 0.8059 |
| Limosilactobacillus reuteri | Limosilactobacillus | 0.6881 |
Saved public metadata
{
"run_accession": "SRR23495477",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322836",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17467144",
"fastq_bytes": "16612912",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/077/SRR23495477/SRR23495477_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "e587f72989830c9212b18fabe650fd4d1a32f09df9787cb3ad2c9de0b65e7e9d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1444,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 9329,
"elapsed_seconds": 0.8968811269996877,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}