SRR23495472 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Ligilactobacillus murinus | Ligilactobacillus | 15.2649 |
| Blautia producta | Blautia | 13.4339 |
| Bacteroides uniformis | Bacteroides | 7.7750 |
| Faecalibaculum rodentium | Faecalibaculum | 7.2265 |
| Muribaculum intestinale | Muribaculum | 6.2918 |
| Parabacteroides goldsteinii | Parabacteroides | 5.1341 |
| Ruminococcus champanellensis | Ruminococcus | 3.1296 |
| Akkermansia muciniphila | Akkermansia | 3.0085 |
| Bacteroides ovatus | Bacteroides | 2.7897 |
| Bacteroides rodentium | Bacteroides | 2.7601 |
| Bacteroides zoogleoformans | Bacteroides | 2.5659 |
| Ligilactobacillus agilis | Ligilactobacillus | 2.5221 |
| Flintibacter butyricus | Flintibacter | 2.4526 |
| Neglectibacter timonensis | Neglectibacter | 2.3545 |
| Blautia luti | Blautia | 2.2118 |
| Ligilactobacillus apodemi | Ligilactobacillus | 2.0662 |
| Blautia hansenii | Blautia | 2.0506 |
| Bacteroides fragilis | Bacteroides | 1.9238 |
| Ligilactobacillus aviarius | Ligilactobacillus | 1.8261 |
| Blautia hominis | Blautia | 1.8242 |
| Blautia glucerasea | Blautia | 1.6450 |
| Gabonibacter massiliensis | Gabonibacter | 1.3488 |
| Ruminococcus gauvreauii | Ruminococcus | 1.3308 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.3080 |
| Bacteroides cellulosilyticus | Bacteroides | 0.9265 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.9238 |
| Marvinbryantia formatexigens | Marvinbryantia | 0.8285 |
| Ligilactobacillus animalis | Ligilactobacillus | 0.8190 |
| Blautia faecis | Blautia | 0.7757 |
| Blautia hydrogenotrophica | Blautia | 0.7621 |
| Allobaculum stercoricanis | Allobaculum | 0.7199 |
Saved public metadata
{
"run_accession": "SRR23495472",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322841",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17558518",
"fastq_bytes": "16701788",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/072/SRR23495472/SRR23495472_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "f14e0e714259c9b1e9dd558d682b72a4405ab5bb177908f58c61ee7fb5f10469",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1452,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 8863,
"elapsed_seconds": 0.8408262259999901,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}