SRR23495468 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 12.9469 |
| Lactobacillus johnsonii | Lactobacillus | 10.6664 |
| Prevotella heparinolytica | Prevotella | 9.3722 |
| Limosilactobacillus reuteri | Limosilactobacillus | 8.5007 |
| Prevotella ruminicola | Prevotella | 6.1596 |
| Ruminococcus champanellensis | Ruminococcus | 5.8496 |
| Lactobacillus taiwanensis | Lactobacillus | 4.9263 |
| Prevotella brevis | Prevotella | 3.8814 |
| Prevotella loescheii | Prevotella | 3.0842 |
| Prevotella buccae | Prevotella | 2.8936 |
| Neglectibacter timonensis | Neglectibacter | 2.6901 |
| Alistipes putredinis | Alistipes | 2.6660 |
| Ligilactobacillus murinus | Ligilactobacillus | 2.3316 |
| Prevotella fusca | Prevotella | 2.1035 |
| Lactobacillus delbrueckii | Lactobacillus | 2.0857 |
| Akkermansia muciniphila | Akkermansia | 2.0803 |
| Odoribacter splanchnicus | Odoribacter | 1.9369 |
| Prevotella oris | Prevotella | 1.7410 |
| Lactobacillus acetotolerans | Lactobacillus | 1.7262 |
| Ruminococcus gauvreauii | Ruminococcus | 1.5065 |
| Alistipes finegoldii | Alistipes | 1.4598 |
| Ligilactobacillus agilis | Ligilactobacillus | 1.3628 |
| Lactobacillus psittaci | Lactobacillus | 1.3271 |
| Ruminococcus flavefaciens | Ruminococcus | 1.3240 |
| Prevotella buccalis | Prevotella | 1.1911 |
| Alistipes dispar | Alistipes | 1.0751 |
| Prevotella copri | Prevotella | 1.0463 |
| Parabacteroides goldsteinii | Parabacteroides | 1.0391 |
| Prevotella stercorea | Prevotella | 1.0259 |
Saved public metadata
{
"run_accession": "SRR23495468",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322844",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17388722",
"fastq_bytes": "16665424",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/068/SRR23495468/SRR23495468_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "90519388702d64b5f419763184874fb09ada6339f2caf7db3ca71fd4d120696b",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1442,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 9181,
"elapsed_seconds": 0.8931774590000714,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}