SRR23495458 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus johnsonii | Lactobacillus | 18.2186 |
| Limosilactobacillus reuteri | Limosilactobacillus | 17.7809 |
| Muribaculum intestinale | Muribaculum | 9.4641 |
| Lactobacillus taiwanensis | Lactobacillus | 8.6001 |
| Prevotella heparinolytica | Prevotella | 6.2680 |
| Ruminococcus champanellensis | Ruminococcus | 4.1281 |
| Lactobacillus acetotolerans | Lactobacillus | 3.6002 |
| Prevotella loescheii | Prevotella | 3.5115 |
| Lactobacillus delbrueckii | Lactobacillus | 3.3719 |
| Prevotella ruminicola | Prevotella | 3.0981 |
| Prevotella brevis | Prevotella | 2.4859 |
| Ligilactobacillus murinus | Ligilactobacillus | 2.1547 |
| Prevotella buccae | Prevotella | 1.9934 |
| Faecalibaculum rodentium | Faecalibaculum | 1.7260 |
| Prevotella fusca | Prevotella | 1.5767 |
| Neglectibacter timonensis | Neglectibacter | 1.2888 |
| Lactobacillus psittaci | Lactobacillus | 1.1939 |
| Alistipes putredinis | Alistipes | 1.0874 |
| Ruminococcus gauvreauii | Ruminococcus | 1.0270 |
| Prevotella oris | Prevotella | 0.9708 |
| Lactobacillus gasseri | Lactobacillus | 0.8004 |
| Allobaculum stercoricanis | Allobaculum | 0.6904 |
| Prevotella buccalis | Prevotella | 0.6323 |
| Prevotella nigrescens | Prevotella | 0.6241 |
| Prevotella intermedia | Prevotella | 0.6012 |
| Ligilactobacillus agilis | Ligilactobacillus | 0.5840 |
| Parabacteroides goldsteinii | Parabacteroides | 0.5638 |
| Lactobacillus hominis | Lactobacillus | 0.5218 |
| Prevotella stercorea | Prevotella | 0.5098 |
| Prevotella copri | Prevotella | 0.5026 |
| Prevotella corporis | Prevotella | 0.4237 |
Saved public metadata
{
"run_accession": "SRR23495458",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322861",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17580843",
"fastq_bytes": "16868853",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/058/SRR23495458/SRR23495458_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "113d2e45a2760298f6ace6989c4efa54232f3ab1f82569c49faac76667b91fde",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1451,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 6986,
"elapsed_seconds": 1.010368691000167,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}