SRR23495457 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 30.2220 |
| Prevotella heparinolytica | Prevotella | 12.6188 |
| Prevotella loescheii | Prevotella | 6.3434 |
| Prevotella ruminicola | Prevotella | 4.8404 |
| Odoribacter laneus | Odoribacter | 4.0367 |
| Odoribacter splanchnicus | Odoribacter | 4.0367 |
| Ligilactobacillus murinus | Ligilactobacillus | 3.9985 |
| Prevotella buccae | Prevotella | 3.7625 |
| Prevotella brevis | Prevotella | 3.4242 |
| Prevotella fusca | Prevotella | 3.4059 |
| Prevotella oris | Prevotella | 2.2924 |
| Alistipes putredinis | Alistipes | 2.2144 |
| Prevotella intermedia | Prevotella | 2.0145 |
| Lactobacillus johnsonii | Lactobacillus | 1.9663 |
| Alistipes dispar | Alistipes | 1.6805 |
| Prevotella dentalis | Prevotella | 1.4597 |
| Prevotella stercorea | Prevotella | 1.3605 |
| Prevotella buccalis | Prevotella | 1.3130 |
| Alistipes finegoldii | Alistipes | 1.2897 |
| Prevotella copri | Prevotella | 1.2684 |
| Prevotella bryantii | Prevotella | 1.1243 |
| Prevotella melaninogenica | Prevotella | 1.1212 |
| Lactobacillus taiwanensis | Lactobacillus | 1.0420 |
| Prevotella corporis | Prevotella | 1.0022 |
| Prevotella shahii | Prevotella | 0.9050 |
| Neglectibacter timonensis | Neglectibacter | 0.7616 |
| Limosilactobacillus reuteri | Limosilactobacillus | 0.4950 |
Saved public metadata
{
"run_accession": "SRR23495457",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322830",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17513247",
"fastq_bytes": "16828549",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/057/SRR23495457/SRR23495457_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "f8c5d39ab83561d4f345dd2fe4623dfa466cc9dbe6af0f29ee23f2f22644fdfd",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1450,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 9346,
"elapsed_seconds": 0.8285643639999307,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}