SRR23495456 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus johnsonii | Lactobacillus | 14.3532 |
| Muribaculum intestinale | Muribaculum | 10.7407 |
| Prevotella heparinolytica | Prevotella | 8.5521 |
| Limosilactobacillus reuteri | Limosilactobacillus | 7.7768 |
| Lactobacillus taiwanensis | Lactobacillus | 7.4312 |
| Ruminococcus champanellensis | Ruminococcus | 6.9789 |
| Prevotella loescheii | Prevotella | 4.7981 |
| Prevotella ruminicola | Prevotella | 3.7879 |
| Prevotella fusca | Prevotella | 3.0682 |
| Pseudoflavonifractor phocaeensis | Pseudoflavonifractor | 3.0324 |
| Prevotella buccae | Prevotella | 2.6024 |
| Odoribacter splanchnicus | Odoribacter | 2.4390 |
| Prevotella brevis | Prevotella | 2.4388 |
| Odoribacter laneus | Odoribacter | 2.3062 |
| Alistipes putredinis | Alistipes | 2.1256 |
| Ligilactobacillus murinus | Ligilactobacillus | 2.0211 |
| Prevotella oris | Prevotella | 1.5159 |
| Neglectibacter timonensis | Neglectibacter | 1.4991 |
| Agathobaculum desmolans | Agathobaculum | 1.4886 |
| Alistipes dispar | Alistipes | 1.4372 |
| Ruminococcus gauvreauii | Ruminococcus | 1.3252 |
| Prevotella intermedia | Prevotella | 1.2921 |
| Pseudoflavonifractor capillosus | Pseudoflavonifractor | 1.2734 |
| Lactobacillus gasseri | Lactobacillus | 1.2622 |
| Lactobacillus acetotolerans | Lactobacillus | 1.2284 |
| Lactobacillus delbrueckii | Lactobacillus | 1.2082 |
| Alistipes finegoldii | Alistipes | 1.0945 |
| Lactobacillus psittaci | Lactobacillus | 0.9227 |
Saved public metadata
{
"run_accession": "SRR23495456",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322831",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17541419",
"fastq_bytes": "16653111",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/056/SRR23495456/SRR23495456_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "ee7b0fc2639af0bc02fe1b96cab13ba939a0f06a8c7fb98c042b24dd8713a4cd",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1451,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 9698,
"elapsed_seconds": 0.8721664009999586,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}