SRR23495454 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus reuteri | Limosilactobacillus | 28.3308 |
| Lactobacillus johnsonii | Lactobacillus | 26.0880 |
| Lactobacillus taiwanensis | Lactobacillus | 11.9613 |
| Muribaculum intestinale | Muribaculum | 5.4036 |
| Prevotella heparinolytica | Prevotella | 3.0966 |
| Ruminococcus champanellensis | Ruminococcus | 3.0916 |
| Lactobacillus acetotolerans | Lactobacillus | 2.5968 |
| Lactobacillus delbrueckii | Lactobacillus | 2.4899 |
| Lactobacillus gasseri | Lactobacillus | 2.2216 |
| Prevotella loescheii | Prevotella | 1.7010 |
| Lactobacillus psittaci | Lactobacillus | 1.3938 |
| Prevotella ruminicola | Prevotella | 1.3153 |
| Prevotella fusca | Prevotella | 1.0742 |
| Prevotella buccae | Prevotella | 1.0126 |
| Alistipes putredinis | Alistipes | 0.9040 |
| Odoribacter splanchnicus | Odoribacter | 0.7990 |
| Prevotella brevis | Prevotella | 0.7966 |
| Ligilactobacillus murinus | Ligilactobacillus | 0.6994 |
| Lactobacillus helveticus | Lactobacillus | 0.6736 |
| Odoribacter laneus | Odoribacter | 0.6454 |
| Prevotella oris | Prevotella | 0.6276 |
| Lactobacillus hominis | Lactobacillus | 0.6212 |
| Prevotella buccalis | Prevotella | 0.5668 |
| Limosilactobacillus fermentum | Limosilactobacillus | 0.5578 |
| Ruminococcus flavefaciens | Ruminococcus | 0.4951 |
| Prevotella copri | Prevotella | 0.4853 |
| Ruminococcus gauvreauii | Ruminococcus | 0.3512 |
Saved public metadata
{
"run_accession": "SRR23495454",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322833",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17716609",
"fastq_bytes": "16868103",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/054/SRR23495454/SRR23495454_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "c711419b3172c46d26d417f6dbd932b066114d8475d9cef20df73e899194a5e6",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1471,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 5344,
"elapsed_seconds": 1.0617422640000314,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}