SRR23495452 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus johnsonii | Lactobacillus | 16.0235 |
| Akkermansia muciniphila | Akkermansia | 13.0452 |
| Muribaculum intestinale | Muribaculum | 11.5173 |
| Lactobacillus taiwanensis | Lactobacillus | 8.2356 |
| Prevotella heparinolytica | Prevotella | 6.8203 |
| Prevotella ruminicola | Prevotella | 3.1790 |
| Ligilactobacillus murinus | Ligilactobacillus | 3.1449 |
| Ruminococcus champanellensis | Ruminococcus | 3.0538 |
| Prevotella loescheii | Prevotella | 2.8867 |
| Prevotella brevis | Prevotella | 2.5590 |
| Lactobacillus delbrueckii | Lactobacillus | 2.4410 |
| Limosilactobacillus reuteri | Limosilactobacillus | 2.3473 |
| Lactobacillus acetotolerans | Lactobacillus | 2.2090 |
| Prevotella buccae | Prevotella | 2.0419 |
| Prevotella fusca | Prevotella | 1.6964 |
| Alistipes putredinis | Alistipes | 1.3974 |
| Parabacteroides goldsteinii | Parabacteroides | 1.3902 |
| Lactobacillus psittaci | Lactobacillus | 1.3446 |
| Odoribacter splanchnicus | Odoribacter | 1.3055 |
| Prevotella oris | Prevotella | 1.2444 |
| Neglectibacter timonensis | Neglectibacter | 1.0711 |
| Lactobacillus gasseri | Lactobacillus | 1.0688 |
| Prevotella stercorea | Prevotella | 1.0413 |
| Prevotella intermedia | Prevotella | 0.8758 |
| Ligilactobacillus agilis | Ligilactobacillus | 0.8495 |
| Prevotella copri | Prevotella | 0.8182 |
| Alistipes dispar | Alistipes | 0.7885 |
| Prevotella buccalis | Prevotella | 0.7417 |
| Alistipes finegoldii | Alistipes | 0.7311 |
| Odoribacter laneus | Odoribacter | 0.7227 |
| Prevotella corporis | Prevotella | 0.7220 |
| Ruminococcus gauvreauii | Ruminococcus | 0.5925 |
| Lactobacillus hominis | Lactobacillus | 0.5818 |
| Ligilactobacillus aviarius | Ligilactobacillus | 0.5348 |
| Akkermansia glycaniphila | Akkermansia | 0.5145 |
| Lactobacillus helveticus | Lactobacillus | 0.4625 |
Saved public metadata
{
"run_accession": "SRR23495452",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322848",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17520625",
"fastq_bytes": "16938164",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/052/SRR23495452/SRR23495452_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "d723d7973f1bf9f194c3d8334d7d42adffda2d7d4eb285a09895fd331b601856",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1448,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 7576,
"elapsed_seconds": 0.95564308899975,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 2,
"fraction": 0.01,
"adapters_found": {
"27F": 2
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}