SRR23495451 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia producta | Blautia | 26.8167 |
| Blautia hansenii | Blautia | 14.1775 |
| Blautia luti | Blautia | 5.0357 |
| Clostridium phytofermentans | Clostridium | 4.9098 |
| Muribaculum intestinale | Muribaculum | 4.0164 |
| Ruminococcus champanellensis | Ruminococcus | 3.6391 |
| Lactobacillus johnsonii | Lactobacillus | 3.4276 |
| Ruminococcus gauvreauii | Ruminococcus | 3.1863 |
| Clostridium pacaense | Clostridium | 2.9667 |
| Parabacteroides goldsteinii | Parabacteroides | 2.7637 |
| Alistipes putredinis | Alistipes | 2.1293 |
| Limosilactobacillus reuteri | Limosilactobacillus | 2.0873 |
| Odoribacter splanchnicus | Odoribacter | 1.9896 |
| Akkermansia muciniphila | Akkermansia | 1.9292 |
| Clostridium carnis | Clostridium | 1.7101 |
| Blautia obeum | Blautia | 1.6071 |
| Clostridium botulinum | Clostridium | 1.4964 |
| Marvinbryantia formatexigens | Marvinbryantia | 1.4762 |
| Blautia hominis | Blautia | 1.4449 |
| Blautia schinkii | Blautia | 1.3366 |
| Parabacteroides faecis | Parabacteroides | 1.3160 |
| Lactobacillus taiwanensis | Lactobacillus | 1.2713 |
| Alistipes dispar | Alistipes | 1.2451 |
| Clostridium sporogenes | Clostridium | 1.2018 |
| Odoribacter laneus | Odoribacter | 1.1413 |
| Clostridium fallax | Clostridium | 1.0373 |
| Ruminococcus flavefaciens | Ruminococcus | 1.0126 |
| Flintibacter butyricus | Flintibacter | 1.0120 |
| Alistipes senegalensis | Alistipes | 0.9583 |
| Lactobacillus delbrueckii | Lactobacillus | 0.9305 |
| Lactobacillus psittaci | Lactobacillus | 0.7274 |
Saved public metadata
{
"run_accession": "SRR23495451",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322849",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17270399",
"fastq_bytes": "16480865",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/051/SRR23495451/SRR23495451_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "dc4671dfaef560aaf49e9e9b42d9f82d5f4b470f214861a6ea963d75411cd326",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1433,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 8814,
"elapsed_seconds": 1.017438378999941,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}