SRR23495444 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Ligilactobacillus murinus | Ligilactobacillus | 19.6921 |
| Lactobacillus johnsonii | Lactobacillus | 11.3366 |
| Blautia producta | Blautia | 7.7684 |
| Ligilactobacillus aviarius | Ligilactobacillus | 6.1662 |
| Ligilactobacillus agilis | Ligilactobacillus | 6.1650 |
| Parabacteroides goldsteinii | Parabacteroides | 5.0039 |
| Ruminococcus champanellensis | Ruminococcus | 4.5676 |
| Muribaculum intestinale | Muribaculum | 4.4183 |
| Lactobacillus taiwanensis | Lactobacillus | 4.2551 |
| Ligilactobacillus apodemi | Ligilactobacillus | 2.7217 |
| Lactobacillus delbrueckii | Lactobacillus | 2.5927 |
| Blautia hansenii | Blautia | 2.5577 |
| Akkermansia muciniphila | Akkermansia | 2.4158 |
| Lactobacillus acetotolerans | Lactobacillus | 2.2810 |
| Alistipes finegoldii | Alistipes | 2.2254 |
| Alistipes putredinis | Alistipes | 2.1931 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.9550 |
| Lactobacillus psittaci | Lactobacillus | 1.8436 |
| Limosilactobacillus reuteri | Limosilactobacillus | 1.5257 |
| Ligilactobacillus animalis | Ligilactobacillus | 1.5072 |
| Blautia luti | Blautia | 1.2359 |
| Ruminococcus flavefaciens | Ruminococcus | 1.1858 |
| Parabacteroides faecis | Parabacteroides | 0.9959 |
| Ruminococcus gauvreauii | Ruminococcus | 0.8905 |
| Lactobacillus gasseri | Lactobacillus | 0.8633 |
| Parabacteroides distasonis | Parabacteroides | 0.8342 |
| Parabacteroides gordonii | Parabacteroides | 0.8023 |
Saved public metadata
{
"run_accession": "SRR23495444",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322870",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17440662",
"fastq_bytes": "16733578",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/044/SRR23495444/SRR23495444_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "68130f251f8f88849733281fb33dd71cff58f33a906d97bbf1cd9d3dd75dcaac",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1445,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 8866,
"elapsed_seconds": 0.8426413450000609,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}