SRR23495439 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus reuteri | Limosilactobacillus | 22.2906 |
| Lactobacillus johnsonii | Lactobacillus | 22.1576 |
| Lactobacillus taiwanensis | Lactobacillus | 8.6860 |
| Lactobacillus delbrueckii | Lactobacillus | 4.9070 |
| Blautia producta | Blautia | 4.6707 |
| Lactobacillus acetotolerans | Lactobacillus | 4.3056 |
| Ligilactobacillus murinus | Ligilactobacillus | 3.7350 |
| Ruminococcus champanellensis | Ruminococcus | 3.5903 |
| Lactobacillus psittaci | Lactobacillus | 3.5634 |
| Muribaculum intestinale | Muribaculum | 2.1421 |
| Bacteroides uniformis | Bacteroides | 2.0781 |
| Ligilactobacillus aviarius | Ligilactobacillus | 1.6771 |
| Lactobacillus gasseri | Lactobacillus | 1.5300 |
| Blautia hansenii | Blautia | 1.4784 |
| Ligilactobacillus agilis | Ligilactobacillus | 1.4349 |
| Akkermansia muciniphila | Akkermansia | 1.2937 |
| Bacteroides ovatus | Bacteroides | 1.1147 |
| Bacteroides zoogleoformans | Bacteroides | 1.0495 |
| Ruminococcus flavefaciens | Ruminococcus | 0.9909 |
| Lactobacillus hominis | Lactobacillus | 0.9457 |
| Blautia luti | Blautia | 0.9143 |
| Parabacteroides goldsteinii | Parabacteroides | 0.9120 |
| Ligilactobacillus apodemi | Ligilactobacillus | 0.7456 |
| Bacteroides fragilis | Bacteroides | 0.7439 |
| Lactobacillus helveticus | Lactobacillus | 0.6705 |
| Alistipes putredinis | Alistipes | 0.6575 |
| Ruminococcus gauvreauii | Ruminococcus | 0.5930 |
| Faecalibaculum rodentium | Faecalibaculum | 0.5726 |
| Bacteroides rodentium | Bacteroides | 0.5493 |
Saved public metadata
{
"run_accession": "SRR23495439",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322874",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17526218",
"fastq_bytes": "16715587",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/039/SRR23495439/SRR23495439_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "7102bbee58dbcdb4fab6b9e3356a3fe3ef36ad7a8b3659e551e7353ebbe486c0",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1451,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 7268,
"elapsed_seconds": 0.9791939460000094,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}